View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13372_high_2 (Length: 468)
Name: NF13372_high_2
Description: NF13372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13372_high_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 201 - 461
Target Start/End: Complemental strand, 114726 - 114448
Alignment:
| Q |
201 |
aagtagattgcaattttgctcaatatctcaagtagtatggataccagagactaaaactttgtgctgataatggccaggaagaaaaatttcaagtttactt |
300 |
Q |
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|||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
114726 |
aagttgattgcgattttgctcaatatctcaagcagtatggataccagggactaaaactttgtgctgataatggccacgaagaaaaatttccagtttactt |
114627 |
T |
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| Q |
301 |
cctcaatgatgaaaatttaactacacagtttggtaca------------------agaacaaacaatttcaggattggccaaacaatacgcttcaaattg |
382 |
Q |
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| T |
114626 |
cctcaatgatgaaaatttaacaacacagtttggtacaacatgggatcatttctgcagaacaaacaatatcaggattggccaaacaatacgcttcaaattg |
114527 |
T |
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| Q |
383 |
atactttcaaataatacaaaatgtcatgtctacaaaatcaatcatacggctacatcttccactccatctatctgatgat |
461 |
Q |
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| T |
114526 |
atactttcaaataatacaaagtgtaatgtctacaaaatcaatccttcggctacatcttctactccatctatctaatgat |
114448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 215 - 461
Target Start/End: Complemental strand, 23568632 - 23568368
Alignment:
| Q |
215 |
tttgctcaatatctcaagtagtatggataccagagactaaaactttgtgctgataatggccaggaagaaaaatttcaagtttacttcctcaatgatgaaa |
314 |
Q |
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||||| |||||||||||| |||||||||||||| || | ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |
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| T |
23568632 |
tttgcgcaatatctcaagcagtatggataccagggagtcaaactttgtgctgataatggctacgaaggaaaatttcaagtttacttcctcaatgatgaaa |
23568533 |
T |
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| Q |
315 |
atttaactacacagtttggtacaagaa------------------caaacaatttcaggattggccaaacaatacgcttcaaattgatactttcaaataa |
396 |
Q |
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| T |
23568532 |
aattaactacacactttggtacaacatgagataagttttgcattgcaaacaatttcaggattggccaaacaatacgcttcaaattgatactctcaaacaa |
23568433 |
T |
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| Q |
397 |
tacaaaatgtcatgtctacaaaatcaatcatacggctacatcttccactccatctatctgatgat |
461 |
Q |
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| T |
23568432 |
cgcaaaatgtcatgtctacaaaatcaatccttcggctacatcttcaactccatcaatctgatgat |
23568368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 20212836 - 20212755
Alignment:
| Q |
252 |
taaaactttgtgctgataatggccaggaagaaaaatttcaagtttacttcctcaatgatgaaaatttaactacacagtttgg |
333 |
Q |
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| T |
20212836 |
taaaactttgtgttgataatggcaatgaagagaaatttaaggtgtatttcctgaatgatgcaaaattgacaacacagtttgg |
20212755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 11797634 - 11797467
Alignment:
| Q |
26 |
tttttctttctcgttgctttttcctaataccattttgagctctaaacaccacatatgctcttctctaaattgcaactacttccacccttgcaattttgtc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||| || ||||||||||||| |||||| |
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| T |
11797634 |
tttttctttctcgttgctttttcctaataccattttgagctctaaacattacatatgctctgttatgaattgcaaccacctccacccttgcaactttgtc |
11797535 |
T |
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| Q |
126 |
atcttataacaatgaatttaattaacctactttttgagtataaataggagtaaaaagaactgaaagagaggaa |
198 |
Q |
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| T |
11797534 |
atcttctaacaatgaat----ttaacctactttttgagtataaataggagtaaaaagaa-tgaaagagaggaa |
11797467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 215 - 451
Target Start/End: Original strand, 35067399 - 35067653
Alignment:
| Q |
215 |
tttgctcaatatctcaagtagtatggataccagagactaaaactttgtgctgataatggccaggaagaaaaatttcaagtttacttcctcaatgatgaaa |
314 |
Q |
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|||||| | ||||||||| |||||||||| ||| |||| ||||| |||| ||||||||| || ||||||||||| ||| |||||||||| |||||||||| |
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| T |
35067399 |
tttgcttagtatctcaagcagtatggatatcagggacttaaactctgtggtgataatgggcatgaagaaaaattccaactttacttccttaatgatgaaa |
35067498 |
T |
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| Q |
315 |
atttaactacacagtttggtaca------------------agaacaaacaatttcaggattggccaaacaatacgcttcaaattgatactttcaaataa |
396 |
Q |
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| T |
35067499 |
atttgaccacacagtttggtacaacccggtatcgtttctgcaaaacaaataattttaggattggccaaacaatacgcttcaaattgataatttcagataa |
35067598 |
T |
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| Q |
397 |
tacaaaatgtcatgtctacaaaatcaatcatacggctacatcttccactccatct |
451 |
Q |
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| T |
35067599 |
tacaaaatgtcctgtgtacaaagtcaatccttcagcttcatcttctactccatct |
35067653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 215 - 451
Target Start/End: Original strand, 11406205 - 11406459
Alignment:
| Q |
215 |
tttgctcaatatctcaagtagtatggataccagagactaaaactttgtgctgataatggccaggaagaaaaatttcaagtttacttcctcaatgatgaaa |
314 |
Q |
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|||||||| ||||||||| ||||| |||| ||| |||| |||||||||| ||||||||| | ||| ||||| ||||||| |||||||| |||||||||| |
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| T |
11406205 |
tttgctcagtatctcaagcagtatcgatatcagggacttaaactttgtggtgataatgggaatgaaaaaaaaattcaagtgtacttccttaatgatgaaa |
11406304 |
T |
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| Q |
315 |
atttaactacacagtttggtacaag------------------aacaaacaatttcaggattggccaaacaatacgcttcaaattgatactttcaaataa |
396 |
Q |
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|||| || ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
11406305 |
atttgaccacacagtttagtacaatctggtatcatttctgcaaaacaaacaatttcaggattgaccaaacaatacgcttcaaattgatcatttcagataa |
11406404 |
T |
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| Q |
397 |
tacaaaatgtcatgtctacaaaatcaatcatacggctacatcttccactccatct |
451 |
Q |
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| T |
11406405 |
tacaaaatgtcatgtgtacaaagtcaatccttcagcttcatcttctactccatct |
11406459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 441
Target Start/End: Original strand, 26148526 - 26148623
Alignment:
| Q |
344 |
aacaatttcaggattggccaaacaatacgcttcaaattgatactttcaaataatacaaaatgtcatgtctacaaaatcaatcatacggctacatcttc |
441 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||| || ||| |||||| | | ||||||||||| |
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| T |
26148526 |
aacaacttcagaattggccaaacaatacgcttcaaattgatgctttcagatattgctaaatgtcatgtgtataaagtcaatcctccagctacatcttc |
26148623 |
T |
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