View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13372_low_1 (Length: 804)
Name: NF13372_low_1
Description: NF13372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13372_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 18 - 789
Target Start/End: Original strand, 55202054 - 55202829
Alignment:
| Q |
18 |
tctaaattttattttaataaagtgagggtcacttgagttgaaaataaaaaacgatgttcactatagtgatattatagtaattaattcaagttagtagtgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
55202054 |
tctaaattttattttaataaagtgagggtcacttgagttgaaaataaaaaacgatgttcactatagtgatattatagttgttaattcaagttagttgtgt |
55202153 |
T |
|
| Q |
118 |
gactaactttgtaacaaactagcttgtatccaatgcttgtaaaataacttgctgaacaagaaagcctgggatcaatctaaaaatgaagaatcagaattat |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55202154 |
gactaactttgtaacaaactagtgtgtatccaatgcttgtaaaataacttgctgaacaagaaagcctgggatcaatctataaatgaagaatcagaattat |
55202253 |
T |
|
| Q |
218 |
ctccatctaactttcaccaagaatttatttagcttgatccaattgagtgagtgtaagctcgatacaatcttcaatgcactgtgttctaacaagtaataac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55202254 |
ctccatctaactttcaccaagaatttatttagcttgatccaattgagtgagtgtaagctcaatacaatcttcaatgcactgtgttctaacaagtaataac |
55202353 |
T |
|
| Q |
318 |
tcctttcaagaaaaagaagnnnnnnnnnn--gagtgatagctacttaactaatgttcctataaagctcaccaaatttcaaatatgcatgcaataatgtta |
415 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55202354 |
tcctttcaagaaaaagaaaaaaaaaaaaaaagagtgatagctacttaactattgttcctataaagctcaccaaatttcaaatatgcatgcaataatgtta |
55202453 |
T |
|
| Q |
416 |
tttaactagacaaagtgcaatgattttgtttgtgagacagaataaatagcctccaccagcatcttcctatacttcttcttttgatgctccccactcttag |
515 |
Q |
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| T |
55202454 |
tttaactagacaaagtgcaatgattttgtttgtgtgacagaatgaatagcctccaccagcatcttcctatacttcttcttcagatgctccccagtcttag |
55202553 |
T |
|
| Q |
516 |
ttttaacaacctccttctcaagcatcacaataacctcatgaatattctcaggagttacaagttcaagagcaacatcaataatctgccttctaacaacata |
615 |
Q |
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| T |
55202554 |
ttttaacaacctccttctcaagcatcacaacaacctcatgaatattctcaggagttacaagttcaagagcaacatcaataatcttccttccaacaacata |
55202653 |
T |
|
| Q |
616 |
gttacgagcctttgaaagcgccctaagcacatccataaccatatcaaccatattttccctattaagctcattcaaacgatcaagcacaatgag--tttca |
713 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55202654 |
gttacgagccttcgaaaacgccctaagcacatccataaccatatcaaccataatttccctattaagctcattcaaacgatcaagcacaatgagtttttca |
55202753 |
T |
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| Q |
714 |
cattgttatcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtgtaga |
789 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
55202754 |
cattgttatcactcttggaagaaagtaataactgacaataagtagtggcagtaactttaattgcattaggtgtaga |
55202829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 499 - 774
Target Start/End: Complemental strand, 1472202 - 1471924
Alignment:
| Q |
499 |
atgctccccactcttagttttaacaacctccttctcaagcatcacaataacctcatgaatattctcaggagttacaagttcaagagcaacatcaataatc |
598 |
Q |
| |
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||||||||| |||| || |||||||||||||||| |||||||| || ||||| || |||||||| || || | ||| |||||||||| ||||||| || |
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| T |
1472202 |
atgctccccgctctgcgtcttaacaacctccttcttaagcatcataacaacctgatcaatattcttcggcgtaataagctcaagagcaatatcaatagtc |
1472103 |
T |
|
| Q |
599 |
tgccttctaacaacatagttacgagcctttgaaagcgccctaagcacatccataaccatatcaaccatattttccctatta---------agctcattca |
689 |
Q |
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| T |
1472102 |
tttctcctaatatcatgattaggagtc---gataacgccctaagcacatccataaccatatcaaccataatctccctattatccctcttaagctcgttaa |
1472006 |
T |
|
| Q |
690 |
aacgatcaagcacaatgagtttcacattgttatcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaat |
774 |
Q |
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|||||||||||||| || ||||||||||||||||||| |||||| |||||||||||||||||| | ||||| ||||||| |
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| T |
1472005 |
gccgatcaagcacaataagcttcacattgttatcactct---gagaaagcaataactgacaataagtattcgcagccgctttaat |
1471924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 630 - 785
Target Start/End: Complemental strand, 46467160 - 46466999
Alignment:
| Q |
630 |
aaagcgccctaagcacatccataaccatatcaaccatattttcccta---------ttaagctcattcaaacgatcaagcacaatgagtttcacattgtt |
720 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| || | ||||||||||||||| |||||||||||||| |
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| T |
46467160 |
aaagtgccctaagcacatccataaccatatcaaccataatctccctattatacctcttaagctcgttaagacgatcaagcacaataagtttcacattgtt |
46467061 |
T |
|
| Q |
721 |
atcactcttggaagaaagtaataactgacaataagtagtagcagcaactttaattgcattaggtg |
785 |
Q |
| |
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|||||| | ||||| || |||| |||||||| | |||||||| ||| ||||||| |||||| |
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| T |
46467060 |
atcactat---gagaaatcaacaacttacaataagcactagcagcagcttcaattgcagtaggtg |
46466999 |
T |
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Back To:
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