View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13372_low_4 (Length: 285)
Name: NF13372_low_4
Description: NF13372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13372_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 40672956 - 40672692
Alignment:
| Q |
19 |
cacttggccgagagcattgttcgaaggcgccgtaaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttg |
118 |
Q |
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| T |
40672956 |
cacttggccgagagcattgttcggaggcgccgtgaacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttg |
40672857 |
T |
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| Q |
119 |
tttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtgt |
218 |
Q |
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| T |
40672856 |
tttccaatcggaaacatttgaagtatgtttgctacccactaagctttggaatttcgaaaaatgtctacaattcaaccccagctgctctacttcaaggtgt |
40672757 |
T |
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| Q |
219 |
aacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtg |
283 |
Q |
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| T |
40672756 |
aacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtg |
40672692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 40683242 - 40683106
Alignment:
| Q |
53 |
aacatggaagggttgcattcgggctcaaagtgttcacttccatcgggttcaagagttatatctttgtttccaatcggaaacatttgaagtatgtttgcta |
152 |
Q |
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| T |
40683242 |
aacatggaagggttgaattcggtctcaaattgttcacttccatccagtttaagaaagatatctttgaatccaactggataactttgaaggttgtttgcta |
40683143 |
T |
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| Q |
153 |
cccactaagctttggaatttcgaaaaatgtctacaat |
189 |
Q |
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| T |
40683142 |
cccacttagctttgttatttcgcaaaatgtctacaat |
40683106 |
T |
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