View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13373_high_13 (Length: 203)

Name: NF13373_high_13
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13373_high_13
NF13373_high_13
[»] chr1 (9 HSPs)
chr1 (15-196)||(33042567-33042748)
chr1 (49-126)||(30710483-30710560)
chr1 (15-147)||(16252045-16252177)
chr1 (49-127)||(30689713-30689791)
chr1 (49-127)||(30718756-30718834)
chr1 (49-126)||(30656658-30656735)
chr1 (55-126)||(30698600-30698671)
chr1 (49-126)||(30671819-30671896)
chr1 (79-113)||(30623888-30623922)
[»] chr7 (1 HSPs)
chr7 (79-116)||(38862497-38862534)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 33042567 - 33042748
Alignment:
Q  15 agcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33042567 agcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttt 33042666  T
Q  115 tccatgagaggttcttctgcaatactcaattttcctgttgagattgttagagaatcgcttagtgatatgaattgtgatgatg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33042667 tccatgagaggttcttctgcaatactcaattttcctgttgagattgttagagaatcgcttagtgatatgaattgtgatgatg 33042748  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 30710560 - 30710483
Alignment:
Q  49 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 126  Q
    ||||| ||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| |||||||||    
T  30710560 agggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt 30710483  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 16252177 - 16252045
Alignment:
Q  15 agcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttt 114  Q
    |||||| ||||| ||||| || ||  |||| || ||||| ||| ||||||| ||||||||||| ||||| || ||  | |||||||||||||| ||||||    
T  16252177 agcagaaataagggattcaactagacatggcataagggtatggttaggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctttt 16252078  T
Q  115 tccatgagaggttcttctgcaatactcaatttt 147  Q
    || ||||||||||| ||||||| ||| ||||||    
T  16252077 tcaatgagaggttcatctgcaacacttaatttt 16252045  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 30689791 - 30689713
Alignment:
Q  49 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggtt 127  Q
    ||||| ||||| ||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| ||||||||||    
T  30689791 agggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtt 30689713  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 30718834 - 30718756
Alignment:
Q  49 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggtt 127  Q
    ||||| ||||| ||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| ||||||||||    
T  30718834 agggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtt 30718756  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 30656735 - 30656658
Alignment:
Q  49 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 126  Q
    ||||| ||| ||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||| |||||||||    
T  30656735 agggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt 30656658  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 30698671 - 30698600
Alignment:
Q  55 tggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 126  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || || || |||||||||    
T  30698671 tggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgagaggt 30698600  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 30671896 - 30671819
Alignment:
Q  49 agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt 126  Q
    ||||| ||||| ||||| ||||| ||||| |||| ||||||||| |||||||||||||| || ||||| |||||||||    
T  30671896 agggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggt 30671819  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 30623922 - 30623888
Alignment:
Q  79 gaagctgctgctttggcttatgatcaagcagcttt 113  Q
    |||||||||||||| ||||||||||||||||||||    
T  30623922 gaagctgctgctttagcttatgatcaagcagcttt 30623888  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 38862497 - 38862534
Alignment:
Q  79 gaagctgctgctttggcttatgatcaagcagctttttc 116  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  38862497 gaagcagctgctttagcttatgatcaagcagctttttc 38862534  T

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