View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13373_high_4 (Length: 361)
Name: NF13373_high_4
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13373_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 172 - 361
Target Start/End: Original strand, 3864362 - 3864548
Alignment:
| Q |
172 |
ctcatcacaatggccaaacacacccaatgcatagccccccaacactattgtctcaataaacactctc-caggttccaacaccactcatggtacaatgaag |
270 |
Q |
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| T |
3864362 |
ctcatcacaatggccaaacacacccaatgcatagccccccaaaactattgtctcaataaacactccctcaggttccaacaccacttatggtacagtgaag |
3864461 |
T |
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| Q |
271 |
ccgccaccttcaaccaacttaaactccaacgccaaggtgaaagaaaaaacctttattacattgacaattccatcaacctccttgacactat |
361 |
Q |
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| T |
3864462 |
ccgccaccttcaaccaacttaaactccaacgccaaggt----gaaaaaacctttattacatcgacaattccatcaacctccttgacactat |
3864548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 3864217 - 3864338
Alignment:
| Q |
40 |
aacagctaatactttattaataattcactcctgttcaagaggagaggaaagttgcaaaatgctacaacagcaagaaacgccaagacacaaaacaaaacaa |
139 |
Q |
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| T |
3864217 |
aacagctaatactttattaataattcactcctgctcaagaggagaggaaagttgcaaaatgctacaacagcaagaaaagccaagacac--aacaaaacaa |
3864314 |
T |
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| Q |
140 |
actgtgagagaaaataatagagat |
163 |
Q |
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| T |
3864315 |
actgtgagagaaaataatagagat |
3864338 |
T |
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