View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13373_high_6 (Length: 296)
Name: NF13373_high_6
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13373_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 40804446 - 40804178
Alignment:
| Q |
18 |
gaatcaagcttctttggtacctagtggatgaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40804446 |
gaatcaagcttctttggtacctagtggatgaagaaacaaagatattaaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttg |
40804347 |
T |
|
| Q |
118 |
aaacaccaatgatttatgaccagtcacttatctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttc |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40804346 |
aaacaccaatgatttatgaccagtcgcttatctttcctcttaaaaacttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttc |
40804247 |
T |
|
| Q |
218 |
tttgactgtgttgagattcaaatatattaccaattatgtttctcttttgttttaatcccttgatgatgt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40804246 |
tttgactgtgttgagattcaaatatattaccaattatgtttctcttttgttttagtcccttgatgatgt |
40804178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
73 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
127 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University