View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13373_high_8 (Length: 271)
Name: NF13373_high_8
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13373_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 10818648 - 10818472
Alignment:
| Q |
23 |
gagaagagaggtgtatcaaaccttgccatgcatactcagcagcctcagaaagcaaatataaatatttatatatatggtagcgagagacatgcattgcaga |
122 |
Q |
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| T |
10818648 |
gagaagagaggtgtatcaaaccttgccatgcatgctcagcagcctcaggaagcaaatataaatatttatatatatggtagcgagagacatgca-tgcaga |
10818550 |
T |
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| Q |
123 |
gcaaactctggtgtcaaagaagaataatcaggaacatatttttcaaaccaaatttaaatattaagaatatataatcat |
200 |
Q |
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| T |
10818549 |
gcaaactctggtgtcaaagaagaataatcaggaacatatttttcaaaccaaatttaaatattaagaatatataatcat |
10818472 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 10818164 - 10818115
Alignment:
| Q |
222 |
aaacataccatgtgtctagtgacattattgtcatgttgcatatctgatct |
271 |
Q |
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| T |
10818164 |
aaacataccatgtgtctagtgacattattgtcacgttgcatatgtgatct |
10818115 |
T |
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