View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13373_low_10 (Length: 248)
Name: NF13373_low_10
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13373_low_10 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 12468632 - 12468396
Alignment:
| Q |
10 |
attattctagtgcggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggacatccaaaacctatcaacgggttggccttggccaaac |
109 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
12468632 |
attattccagtgcggtttcgagtgaggtccatatcatgattctcatggcccttgtggaagggatatccaaaacctattaacgggttggccttggccaaac |
12468533 |
T |
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| Q |
110 |
tagaataaagagtaacaatttcactacaatatgaacaatataagttaaaagttgatttgattgtggtattttccnnnnnnnnnnnttataactatatacg |
209 |
Q |
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| T |
12468532 |
cagaataaagagcaacaattccactacaatatgaacaatataagttaaaagttgatttgattgtgttattttac--aaaaaaaaattataactatatacg |
12468435 |
T |
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| Q |
210 |
ataaaatcaacacaataaaaaagcaatatgacaaacaca |
248 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
12468434 |
ataaaatcagcacaataaaaaagcaatatgacaaacaca |
12468396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 12465993 - 12465757
Alignment:
| Q |
10 |
attattctagtgcggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggacatccaaaacctatcaacgggttggccttggccaaac |
109 |
Q |
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||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
12465993 |
attattccagtgcggttttgagtgaggtccatatcatgattctcatggcccttgtggaagggatatccaaaacctatcaacgggttaaccttggccaaac |
12465894 |
T |
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| Q |
110 |
tagaataaagagtaacaatttcactacaatatgaacaatataagttaaaagttgatttgattgtggtattttccnnnnnnnnnnnttataactatatacg |
209 |
Q |
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| T |
12465893 |
cagaataaagagtaacaattccactacgatatgaacaatataagttaaaagttgatttgattgtgatattttcc-aaaaaaaaaattataactatatacg |
12465795 |
T |
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| Q |
210 |
ataaaatcaacacaataaaaaagcaatatgacaaacaca |
248 |
Q |
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| T |
12465794 |
ataaaataagcacaat-aaaaagcaatatgacaaacaca |
12465757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 12484756 - 12484528
Alignment:
| Q |
10 |
attattctagtgcggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggacatccaaaacctatcaacgggttggccttggccaaac |
109 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||||| |
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| T |
12484756 |
attattccagtaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagagatatccaaaacctatgaaggggttggccttggccaaac |
12484657 |
T |
|
| Q |
110 |
tagaataaagagtaacaatttcactacaatatgaacaatataagttaaaagttgatttgattgtggtattttccnnnnnnnnnnnttataactatatacg |
209 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||| |
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| T |
12484656 |
caaaataaagagtaacaattccactacaatatgaacaatataagttaaaagttggtttaattgtggtattttc------aattttttttaactatatacg |
12484563 |
T |
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| Q |
210 |
ataaaatcaacacaataaaaaagcaatatgacaaa |
244 |
Q |
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| T |
12484562 |
ataaaataagcacaataaaaaaacaataagacaaa |
12484528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 35721 - 35949
Alignment:
| Q |
10 |
attattctagtgcggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggacatccaaaacctatcaacgggttggccttggccaaac |
109 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||||||| |
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| T |
35721 |
attattccagtaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagagatatccaaaacctatgaaggggttggccttggccaaac |
35820 |
T |
|
| Q |
110 |
tagaataaagagtaacaatttcactacaatatgaacaatataagttaaaagttgatttgattgtggtattttccnnnnnnnnnnnttataactatatacg |
209 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||| |
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| T |
35821 |
caaaataaagagtaacaattccactacaatatgaacaatataagttaaaagttggtttaattgtggtattttc------aattttttttaactatatacg |
35914 |
T |
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| Q |
210 |
ataaaatcaacacaataaaaaagcaatatgacaaa |
244 |
Q |
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||||||| | |||||||||||| ||||| |||||| |
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| T |
35915 |
ataaaataagcacaataaaaaaacaataagacaaa |
35949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 254835 - 254775
Alignment:
| Q |
123 |
aacaatttcactacaatatgaacaatataagttaaaagttgatttgattgtggtattttcc |
183 |
Q |
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||||||| |||| ||| ||||||||||||||||||| || ||||||||||||||| |||| |
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| T |
254835 |
aacaattccactgcaacatgaacaatataagttaaatctttatttgattgtggtatattcc |
254775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 23029462 - 23029410
Alignment:
| Q |
131 |
cactacaatatgaacaatataagttaaaagttgatttgattgtggtattttcc |
183 |
Q |
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|||||||||| ||||||||||||||||| || |||||||| |||||| |||| |
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| T |
23029462 |
cactacaataggaacaatataagttaaatctttatttgattatggtatattcc |
23029410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 28011754 - 28011702
Alignment:
| Q |
131 |
cactacaatatgaacaatataagttaaaagttgatttgattgtggtattttcc |
183 |
Q |
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|||||||||| ||||||||||||||||| || |||||||| |||||| |||| |
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| T |
28011754 |
cactacaataggaacaatataagttaaatctttatttgattatggtatattcc |
28011702 |
T |
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