View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13373_low_11 (Length: 239)

Name: NF13373_low_11
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13373_low_11
NF13373_low_11
[»] chr6 (8 HSPs)
chr6 (15-239)||(7174571-7174795)
chr6 (112-170)||(7140003-7140061)
chr6 (112-170)||(7114801-7114859)
chr6 (112-170)||(7119873-7119931)
chr6 (112-170)||(7123277-7123335)
chr6 (112-170)||(7117325-7117383)
chr6 (112-170)||(7129700-7129758)
chr6 (112-152)||(8679614-8679654)
[»] scaffold0525 (1 HSPs)
scaffold0525 (85-170)||(1922-2007)
[»] chr3 (4 HSPs)
chr3 (85-160)||(777417-777492)
chr3 (85-145)||(7058043-7058103)
chr3 (86-153)||(13490164-13490231)
chr3 (118-162)||(8032539-8032583)
[»] chr4 (1 HSPs)
chr4 (116-170)||(52187614-52187668)
[»] chr2 (3 HSPs)
chr2 (85-169)||(38989901-38989985)
chr2 (115-160)||(43863315-43863360)
chr2 (84-160)||(43866759-43866835)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 7174571 - 7174795
Alignment:
Q  15 atcaggatcaatttaaagcaagttaagaaaacaaatgttgaaatataaattgaaaccaataaaaatgtcctaaagtacctcaagagtatgtgaacaaatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174571 atcaggatcaatttaaagcaagttaagaaaacaaatgttgaaatataaattgaaaccaataaaaatgtcctaaagtacctcaagagtatgtgaacaaatt 7174670  T
Q  115 gtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagtttgagcagatttcttcaaactcctatcatcaatatcaatattta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174671 gtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagtttgagcagatttcttcaaactcctatcatcaatatcaatattta 7174770  T
Q  215 catgcttgacagaacagagattgtt 239  Q
    |||||||||||||||||||||||||    
T  7174771 catgcttgacagaacagagattgtt 7174795  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7140003 - 7140061
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||    
T  7140003 attgtcaatgattcgatattagcaagctcaaccaaccagttgtatataatcaatgaagt 7140061  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7114801 - 7114859
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||||||| ||||||||||||||||||| |||||||| |||||| || |||||    
T  7114801 attgtcaatgattcgatattagcaagctcaaccagccagttgtatagaatcaacgaagt 7114859  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7119873 - 7119931
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||||||| ||||||||||||||||||| |||||||| |||||| || |||||    
T  7119873 attgtcaatgattcgatattagcaagctcaaccagccagttgtatagaatcaacgaagt 7119931  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7123277 - 7123335
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||||||| ||||||||||||||||||| |||||||| |||||| || |||||    
T  7123277 attgtcaatgattcgatattagcaagctcaaccagccagttgtatagaatcaacgaagt 7123335  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7117325 - 7117383
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||||||| |||| |||||||||||||| |||||||| |||||| || |||||    
T  7117325 attgtcaatgattcgatataagcaagctcaaccagccagttgtatagaatcaacgaagt 7117383  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7129700 - 7129758
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||||||| |||| |||||||||||||| |||||||| |||||| || |||||    
T  7129700 attgtcaatgattcgatataagcaagctcaaccagccagttgtatagaatcaacgaagt 7129758  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 8679614 - 8679654
Alignment:
Q  112 attgtcaatgattcaatattagcaagctcaaccaaccagtt 152  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  8679614 attgtcaatgattcgaagttagcaagctcaaccaaccagtt 8679654  T

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Target: scaffold0525 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 1922 - 2007
Alignment:
Q  85 taaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||| |||||||  ||||   |||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||    
T  1922 taaagtacctgaagagtagttgaattgattgtcaatgattcgatattagcaagctcaaccaaccagttgtatataatcaatgaagt 2007  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 777417 - 777492
Alignment:
Q  85 taaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaa 160  Q
    ||||||||||||||||||| |||| | | ||||| |||||| ||||||||||||||||| | ||| ||| ||||||    
T  777417 taaagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattgagtagaa 777492  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 7058043 - 7058103
Alignment:
Q  85 taaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaacca 145  Q
    |||| ||||||||||||   |||| |||||||||||||||||| |||||||||||| ||||    
T  7058043 taaattacctcaagagtgaatgaagaaattgtcaatgattcaacattagcaagctcgacca 7058103  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 13490164 - 13490231
Alignment:
Q  86 aaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaaccaaccagttg 153  Q
    ||||||||| |||||||  |||| | |  ||||||||||||||||||||||||||||| | |||||||    
T  13490164 aaagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttg 13490231  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 8032539 - 8032583
Alignment:
Q  118 aatgattcaatattagcaagctcaaccaaccagttgtgtagaatt 162  Q
    |||||||| ||||||||||| |||||||||||||||  |||||||    
T  8032539 aatgattcgatattagcaagatcaaccaaccagttgaatagaatt 8032583  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 52187668 - 52187614
Alignment:
Q  116 tcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaagt 170  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||| |||||||    
T  52187668 tcaatgattcgatattagcaagctcaaccagccaattgagtagaattgatgaagt 52187614  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 38989985 - 38989901
Alignment:
Q  85 taaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaattaatgaag 169  Q
    ||||||||||| ||||||| |||| |||  ||||| ||||| |||||||| |||||||||| ||| ||| |||||| | ||||||    
T  38989985 taaagtacctcgagagtatttgaataaaaagtcaacgattcgatattagccagctcaaccagccaattgagtagaaatgatgaag 38989901  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 43863315 - 43863360
Alignment:
Q  115 gtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaa 160  Q
    |||||||||||||  |||||||| ||||||||||||||| ||||||    
T  43863315 gtcaatgattcaacgttagcaagttcaaccaaccagttgagtagaa 43863360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 43866759 - 43866835
Alignment:
Q  84 ctaaagtacctcaagagtatgtgaacaaattgtcaatgattcaatattagcaagctcaaccaaccagttgtgtagaa 160  Q
    |||| |||||||||||||||   |||| || ||||||||||| || || | |||| |||||||||||||| ||||||    
T  43866759 ctaatgtacctcaagagtatacaaacagatagtcaatgattcgatgttggtaagcacaaccaaccagttgagtagaa 43866835  T

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