View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13373_low_12 (Length: 238)
Name: NF13373_low_12
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13373_low_12 |
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| [»] scaffold0137 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4156 - 4370
Alignment:
| Q |
18 |
ctaatgagggtgattcttaattaacacttatatggaatgactaaaagtctaaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctata |
115 |
Q |
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| T |
4156 |
ctaatgagggtgattcttaattaacacttatatggaatgactaaaa--------tgacatctccttcagaggaagaatacaccccgtctgtcaacctata |
4247 |
T |
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| Q |
116 |
tggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagaga |
215 |
Q |
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| T |
4248 |
tggaatatcagtgctcaatgctcgtctagctggtcctgcatgaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagaga |
4347 |
T |
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| Q |
216 |
ccaatgattattaatcaaaatgc |
238 |
Q |
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| T |
4348 |
ccaatgattattaatcaaaatgc |
4370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 3896491 - 3896716
Alignment:
| Q |
18 |
ctaatgagggtgattcttaattaacacttatatggaatgactaaaa-gtc--taaaatgacatctccttcagaggaagaatacacc--gtccgtcaacct |
112 |
Q |
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| T |
3896491 |
ctaatgagggtgattcttaaataatacttatatggaatgactaaaatgacattcatagcacatctccttcagaggaagaatacaccccgtccgtcaacct |
3896590 |
T |
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| Q |
113 |
atatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaag |
212 |
Q |
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| T |
3896591 |
atatggaatatcagtgctcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaactttggataatattataaag |
3896690 |
T |
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| Q |
213 |
agaccaatgattattaatcaaaatgc |
238 |
Q |
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| T |
3896691 |
agatcaatgattattaatcaaaatgc |
3896716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 46285347 - 46285239
Alignment:
| Q |
130 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
227 |
Q |
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| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
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| Q |
228 |
aatcaaaatgc |
238 |
Q |
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| T |
46285249 |
aattaaaatgc |
46285239 |
T |
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