View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13373_low_3 (Length: 383)
Name: NF13373_low_3
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13373_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 39262129 - 39261779
Alignment:
| Q |
20 |
ttacttacaatagttatcatccattttctaccttttcaattacagaaattttatattttacaagtacatactgaaccacattcnnnnnnngagctaatga |
119 |
Q |
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| T |
39262129 |
ttacttacaatagttatcatccattttctaccttttcaattacggaaattttatattttacaagtacatactgaaccacattctttttttgagctaatga |
39262030 |
T |
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| Q |
120 |
tgtaattatagaaaagcagcaagtacaaaccagtagcattttgtgtcacaggtatggagagtagtagggtttggaaacttgcaaagtagtggtcccttgg |
219 |
Q |
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| T |
39262029 |
tgtaattatagaaaagcagtaagtacaaaccagtagcattttgtgtcacaggtatggagagtagtagggtttggaaacttgcaaagtagtggtcccttgg |
39261930 |
T |
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| Q |
220 |
gctctcaaatttgtggctgagatttcataatgcttcagagtgaatcaaaaccttgctaaactgtagagtttgacaagctcatcaattatcacctttgtct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261929 |
gctctcaaatttgtggctgagatttcataatgcttcagaatgaatcaaaaccttgctaaactgtagagtttgacaagctcatcaattatcacctttgtct |
39261830 |
T |
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| Q |
320 |
tcaatttcaagcatcaactacattcaattatattttctgtcaacacaggtt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261829 |
tcaatttcaagcatcaactacattcaattatattttctgtcaacacaggtt |
39261779 |
T |
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