View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13373_low_7 (Length: 278)

Name: NF13373_low_7
Description: NF13373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13373_low_7
NF13373_low_7
[»] chr6 (6 HSPs)
chr6 (1-262)||(7174781-7175042)
chr6 (43-202)||(7120034-7120193)
chr6 (43-170)||(7114962-7115089)
chr6 (43-170)||(7123438-7123565)
chr6 (104-232)||(8656149-8656277)
chr6 (180-232)||(7140310-7140362)
[»] chr7 (1 HSPs)
chr7 (111-192)||(6849066-6849147)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7174781 - 7175042
Alignment:
Q  1 agaacagagatggttcttgcttccacatagttgcttaaccaaaggaatacccttgtaaacaaaggtgcaaagatttggagtatttaactcgaagttgcaa 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7174781 agaacagagattgttcttgcttccacatagttgcttaaccaaaggaatacccttgtaaacaaagttgcaaagatttggagtatttaactcgaagttgcaa 7174880  T
Q  101 tattctattattaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174881 tattctattattaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaa 7174980  T
Q  201 ataatgtaaaaggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174981 ataatgtaaaaggcttgacacggccatcatcgcccgcacgaaaggctaagtaatgtaaagac 7175042  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 7120034 - 7120193
Alignment:
Q  43 aggaatacccttgtaaacaaaggtgcaaagatttggagtatttaactcgaagttgcaatattctattattaaattggcaagtgtgacacttgatatgcag 142  Q
    |||||| ||||||||||||||||| || ||| ||||||| | |||||| |||||||| || ||||||  |||||||  ||||||| |||| ||||||||     
T  7120034 aggaatgcccttgtaaacaaaggtacatagacttggagtgtataactccaagttgcagtagtctattgctaaattgataagtgtggcactcgatatgcac 7120133  T
Q  143 atgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaat 202  Q
    | |||| | ||| || |||| ||||||| ||| ||| ||||| | || ||||| ||||||    
T  7120134 aagtttcgattagcatgaacgttacaatctcgaaggatcaaattttttaacctcttaaat 7120193  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 7114962 - 7115089
Alignment:
Q  43 aggaatacccttgtaaacaaaggtgcaaagatttggagtatttaactcgaagttgcaatattctattattaaattggcaagtgtgacacttgatatgcag 142  Q
    |||||| ||||||||||||||||| || ||| ||||||| | |||||| |||||||| || ||||||  |||||||  |||| || |||| ||||||||     
T  7114962 aggaatgcccttgtaaacaaaggtacatagacttggagtgtataactccaagttgcagtagtctattgctaaattgataagtttggcactcgatatgcac 7115061  T
Q  143 atgttttgtttaccaagaaccttacaat 170  Q
    | |||| | |||||| |||| |||||||    
T  7115062 aagtttcgattaccatgaacgttacaat 7115089  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 7123438 - 7123565
Alignment:
Q  43 aggaatacccttgtaaacaaaggtgcaaagatttggagtatttaactcgaagttgcaatattctattattaaattggcaagtgtgacacttgatatgcag 142  Q
    |||||| ||||||||||||||||| || ||| ||||||| | |||||| |||||||| || ||||||  |||||||  |||| || |||| ||||||||     
T  7123438 aggaatgcccttgtaaacaaaggtacatagacttggagtgtataactccaagttgcagtagtctattgctaaattgataagtttggcactcgatatgcac 7123537  T
Q  143 atgttttgtttaccaagaaccttacaat 170  Q
    | |||| | |||||| |||| |||||||    
T  7123538 aagtttcgattaccatgaacgttacaat 7123565  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 8656149 - 8656277
Alignment:
Q  104 tctattattaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaacctgttaaata 203  Q
    |||||| |||||||||  |||||| ||||||||||||||| |||||||||  |||||     ||||| | | ||  |||||||||||||||| ||||||     
T  8656149 tctattgttaaattggtgagtgtggcacttgatatgcagaggttttgtttgtcaagagagcgacaattttgaagaatcaaactattcaacctcttaaatg 8656248  T
Q  204 atgtaaaaggcttgacacggccatcatcg 232  Q
     || ||||||||  |||||||||||||||    
T  8656249 ctgaaaaaggctcaacacggccatcatcg 8656277  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 7140310 - 7140362
Alignment:
Q  180 tcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcg 232  Q
    |||||||||||||||| ||||||  || ||||||||  |||||||||||||||    
T  7140310 tcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatcg 7140362  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 6849147 - 6849066
Alignment:
Q  111 ttaaattggcaagtgtgacacttgatatgcagatgttttgtttaccaagaaccttacaatatcgtagggtcaaactattcaa 192  Q
    ||||||||||||||||  ||||||||||||||| ||||||| ||  ||||||  ||||||| || | | ||||||| |||||    
T  6849147 ttaaattggcaagtgtagcacttgatatgcagaggttttgtctattaagaactctacaataacgaatgatcaaactgttcaa 6849066  T

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