View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13374_high_1 (Length: 630)
Name: NF13374_high_1
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 252 - 476
Target Start/End: Complemental strand, 37119341 - 37119117
Alignment:
| Q |
252 |
cccagatccagtgatgaaagttgaccatataatcagcaatgaattactagaattgaagttgaaatgaagaggaattaggttaatggtcaccgattagggt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119341 |
cccagatccagtgatgaaagttgaccatataatcagcgatgaattactagaattgaagttgaaatgaagaggaattaggttaatggtcaccgattagggt |
37119242 |
T |
|
| Q |
352 |
ttggtgattgtgaatttatgaagnnnnnnnnnnnnnnnnntagaagagtgattgaagggaagaaagagaccttaatgtttaggtgatagtggattgaaac |
451 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119241 |
ttggtgattgtgaatttatgaagaaaaaataaaaataaaatagaagagtgattgaagggaagaaagagaccttaatgtttaggtgatagtggattgaaac |
37119142 |
T |
|
| Q |
452 |
attttggttttcgtttcgatctggt |
476 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37119141 |
attttggttttcgtttcgatctggt |
37119117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 37119490 - 37119420
Alignment:
| Q |
103 |
ctttattacaaatcaaagaaacccaagtttgaaagacaaagatttaaccaacaaaaccatgtttgctgaca |
173 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119490 |
ctttattacaaatcaaagaaaaccaagtttgaaagacaaagatttaaccaacaaaaccatgtttgctgaca |
37119420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 551 - 615
Target Start/End: Complemental strand, 37119033 - 37118969
Alignment:
| Q |
551 |
ttgtatgcgtgttcggtggtgagatgaagatggacggttgtgatgaaggtgttgggtttgtgtgt |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119033 |
ttgtatgcgtgttcggtggtgagatgaagatggacggttgtgatgaaggtgttgggtttgtgtgt |
37118969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University