View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_high_10 (Length: 356)
Name: NF13374_high_10
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 40839005 - 40839353
Alignment:
| Q |
1 |
ttggtgcatctgttacattttctttatatctttcccttgtgcagctttcttttgacaaagttataaaaagcgaaaccttttctgttatattagacatgca |
100 |
Q |
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| T |
40839005 |
ttggtgcatctgttacattttctttatatctttcccttgtgcagctttcttttgacaaagttataaaaagcgaaaccttttctgttatattagacatgca |
40839104 |
T |
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| Q |
101 |
attttacccttctttcgtcgctacttgtgcttgtgttgttgggttgtttgcaagtggagaatggaaaagtttgaataaggagatgaaggaatatgaactg |
200 |
Q |
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| T |
40839105 |
attttacccttctttcgtcgctacttgtgcttgtgttgttgggttgtttgcaagtggagaatggaaaagtttgaataaggagatgaaggaatatgaactg |
40839204 |
T |
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| Q |
201 |
ggaaagttgtcatatataatgactttgttttggactgctgtgacatggcaagtatcttccattggtatgttagggttagttttagatgtatcttcattgt |
300 |
Q |
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| T |
40839205 |
ggaaaggtgtcatatataatgactttgttttggactgctgtgacatggcaagtatcttccattggtatgttagggttagttttagatgtatcttcattgt |
40839304 |
T |
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| Q |
301 |
tctcaaatgtaataggtacagtggtacttcctgtaggtcctagccttgc |
349 |
Q |
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| T |
40839305 |
tctcaaatgtaataggtacagtggtacttcccgtaggtcctatccttgc |
40839353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 4583079 - 4582911
Alignment:
| Q |
24 |
ttatatctttcccttgtgcagctttcttttgacaaagttataaaaagcgaaaccttttctgttatattagacatgcaattttacccttctttcgtcgcta |
123 |
Q |
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| T |
4583079 |
ttatatctcgcccttgtgcaatattcttttgagaaaattataaaaagagaaacattttctgcaatcttggacatgcaattttacccatccttcattgcta |
4582980 |
T |
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| Q |
124 |
cttgtgcttgtgttgttgggttgtttgcaagtggagaatggaaaagtttgaataaggagatgaaggaat |
192 |
Q |
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| T |
4582979 |
cttgtgcttgtgttgtgggattgtttgcaagtggagaatggaaaattttggaaaaggagatggaggaat |
4582911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Original strand, 28957493 - 28957522
Alignment:
| Q |
270 |
ttagggttagttttagatgtatcttcattg |
299 |
Q |
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| T |
28957493 |
ttagggttagttttagatgtatcttcattg |
28957522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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