View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_high_5 (Length: 504)
Name: NF13374_high_5
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 39086615 - 39086888
Alignment:
| Q |
1 |
gtgaacgaaaaatttaaccacgacaaccatattttttgaactttattgcaaaattatacctatatttcatcatgttatttaaacaaaaaatatcttagaa |
100 |
Q |
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| T |
39086615 |
gtgaacgaaaaatttaaccacgacaaccatattttttgaactttattgcaaaattatacctatattttatcatgttatttaaacaaaaaatatcttagaa |
39086714 |
T |
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| Q |
101 |
aacgtatatgtaatttgttaggtatgaatcgtagttataataagaggttggattgataaagataattttgtaaactaaattatttatattcaagttgcac |
200 |
Q |
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| T |
39086715 |
aacgtatatgtaatttgttaggtatgaatcgtagtt---ataagaggttggattgataaagataattttgtaaactaaattatttatattcaagttgtac |
39086811 |
T |
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| Q |
201 |
tatgtgaactctaaatttgattaatataaaagaaatatagtcactttgttttaccattgaagcacatattcataatt |
277 |
Q |
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| T |
39086812 |
tatgtgaactctaaatttgattaatataaaagaaatatagtcactttgttttaccattgaagcacatattcataatt |
39086888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 392 - 478
Target Start/End: Original strand, 39086964 - 39087050
Alignment:
| Q |
392 |
ataattggttatcatcgttgcaaaataaaccattccttcactgtttacgtttatcatatctttattcttttaaagcaaattgacatt |
478 |
Q |
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| T |
39086964 |
ataattggttatcatcgttgcaaaataaatcattcgttcactgttcacgtttatcatatctttattcttttaaagcaaattgacatt |
39087050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 39086927 - 39086964
Alignment:
| Q |
306 |
tagttattgaggattgaaccactatcaaactcttttaa |
343 |
Q |
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| T |
39086927 |
tagtttttgaggattgaacccctatcaaactcttttaa |
39086964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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