View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_high_6 (Length: 495)
Name: NF13374_high_6
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Complemental strand, 36062841 - 36062374
Alignment:
| Q |
13 |
aatatgcacaacagaacaaagggtaggcatatattgaaatattcacttcaatctcgaattttgaaaccataaatgatgatatttgtcgtatagcgaccga |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36062841 |
aatatgcacaacagaacaaagggtatgcatatattgaaatattcacttcaatctcgaattttgaaaccataaatgatgatatttgtcgtatagcgaccga |
36062742 |
T |
|
| Q |
113 |
caaaatggccaacattttgattcttccttttcacaagcaatgggaaattgatggtagtgttcaaataacaaacaaagaaattcaatacatgaacatcaaa |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36062741 |
caaaatggccaacatttggattcttccttttcacaagcaatgggaaattgatggtagtgttcaaataacaaacaaagaaattcaatacatgaacatcaaa |
36062642 |
T |
|
| Q |
213 |
gttctcaaaatggcaccatgttctgttgggatcctagttgatagaagaacagttaataccacacaattgttttcgaaacaaatatcatcatcagcatccc |
312 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36062641 |
gttctcaaaatggcaccatgttctgttagaatcctagttgatagaagaacagttaataccacacaattgttttcgaaacaaatatcatcatcagcatccc |
36062542 |
T |
|
| Q |
313 |
atgttggtgtgttcttcattggaggtgcagatgatatcgaagcactagcctatagctcgagaatgtgtagacatgaatatgtgaatgtaacggtggttag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36062541 |
atgttggtgtgttcttcattggaggtgcagatgatatcgaagcactagcctatagctcgagaatgtgtagacatgaatatttgaatgtaacggtggttag |
36062442 |
T |
|
| Q |
413 |
gtttctacaatttggacaggaaaactcgatagagtggaagcgcaatagcgatattattgacgaatatg |
480 |
Q |
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|||||| ||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||| |
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| T |
36062441 |
gtttcttcaatttggacatgaaaactcgatagagaggaagcacgatagcgatattattgacgaatatg |
36062374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 36061072 - 36060839
Alignment:
| Q |
13 |
aatatgcacaacagaacaaagggtaggcatatattgaaatattcacttcaatctcgaattttgaaaccataaatgatgatatttgtcgtatagcgaccga |
112 |
Q |
| |
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|||||| |||||||||||||||||| |||| |||||| |||| ||| | |||| |||| ||||||||||||||||||||||||| |||| |
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| T |
36061072 |
aatatgaacaacagaacaaagggtatgcatcaattgaattatttcctttagtctcaaattacgaaaccataaatgatgatatttgtccaatag------- |
36060980 |
T |
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| Q |
113 |
caaaatggccaacattttgattcttccttttcacaagcaatgggaaattgatggtagtgttcaaataacaaacaaagaaattcaatacatgaacatcaaa |
212 |
Q |
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||| |||||||||||||||||| |||||||||||||| |||||||| |||||| |||| || ||||||||||| |||||||||||||||||| || |
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| T |
36060979 |
---aatagccaacattttgattctttcttttcacaagcaaagggaaattaatggtaatgttgaag-aacaaacaaagcaattcaatacatgaacattaag |
36060884 |
T |
|
| Q |
213 |
gttctcaaaatggcaccatgttctgttgggatcctagttgataga |
257 |
Q |
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||||||||||||||||| | || || ||| ||||||||||||||| |
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| T |
36060883 |
gttctcaaaatggcaccttattatgatggaatcctagttgataga |
36060839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 32340994 - 32340907
Alignment:
| Q |
325 |
tcttcattggaggtgcagatgatatcgaagcactagcctatagctcg-agaatgtgtagacatgaatatgtgaatgtaacggtggttag |
412 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| || | |||||| ||||||||||| |||||||||||| |||||||| |
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| T |
32340994 |
tcttcattggaggtgcagatgatgccgaggcactagcctat-gcaagtagaatggctagacatgaatgtgtgaatgtaaccgtggttag |
32340907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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