View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_high_7 (Length: 475)
Name: NF13374_high_7
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 16992921 - 16992479
Alignment:
| Q |
19 |
ggaacatagtgatgagaagatgtctgagggtggtggtgaaagtggaggaagtggtgattttgatgctaaagatggaaagtttgttgatgaaaagtgtggg |
118 |
Q |
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| T |
16992921 |
ggaacatagtgatgagaagatgtctgagggtggtggtgaaagtggaggaagtg---attttgatgctaaagatggaaagtttgttgatgaaaagtgtggg |
16992825 |
T |
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| Q |
119 |
gcacaagataacctgatttcgataaattcagatgagtatggtgaaagtgaagaacactctgttgattctgatgctgataatgaagaagaagnnnnnnnnn |
218 |
Q |
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| T |
16992824 |
gcacaagataacctgatttcgataaattcagatgagtatggtgaaagtgaagaacactctgttgattctgatcctgataacgaagaagaagaaaaagaaa |
16992725 |
T |
|
| Q |
219 |
nnnnnnnnnnngcagatgatgttgttaaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattc |
318 |
Q |
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| T |
16992724 |
aagaaaaa---gcagatgatgttgttaaaagtgatgaaagtgggggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattc |
16992628 |
T |
|
| Q |
319 |
tgaagagagtgaggaggatgattcggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgat |
418 |
Q |
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| T |
16992627 |
tgaagagagtaaggaggatgattcggataagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgat |
16992528 |
T |
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| Q |
419 |
gacgatgactgttcttcaagctcctcttatgttaatgatgatgatgatg |
467 |
Q |
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| T |
16992527 |
gacgatgactgttcttcaagctcctcttatgttaatgatgatgatgatg |
16992479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 424
Target Start/End: Original strand, 10601660 - 10601747
Alignment:
| Q |
337 |
tgattcggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgat |
424 |
Q |
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| T |
10601660 |
tgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgat |
10601747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 17008185 - 17008126
Alignment:
| Q |
361 |
tgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatga |
420 |
Q |
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| T |
17008185 |
tgattctagtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatga |
17008126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 17008625 - 17008487
Alignment:
| Q |
77 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg---ggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---ag |
170 |
Q |
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| T |
17008625 |
tttgatgctaaagagggaaactttgttgagaaaaaatgtggtttggatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaag |
17008526 |
T |
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| Q |
171 |
aacactctgttgattctgatgctgataatgaagaagaag |
209 |
Q |
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| T |
17008525 |
aacactctgttggttttggtggtgataatgaagaagaag |
17008487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 10601253 - 10601293
Alignment:
| Q |
77 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
117 |
Q |
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| T |
10601253 |
tttgatgcgaaagatggaaagtttgttgacgaaaagtgtgg |
10601293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 245 - 465
Target Start/End: Original strand, 35262596 - 35262819
Alignment:
| Q |
245 |
aaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtgagg---aggatgatt |
341 |
Q |
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| T |
35262596 |
aaaagtgatgaaagtgggggaattggtaggttttctgataaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggaggatgatt |
35262695 |
T |
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| Q |
342 |
cggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctc |
441 |
Q |
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| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| | |||||| |||||||||||| |||| |||||| ||||||| ||||| |
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| T |
35262696 |
ctgatgagagtgaagaaaatgactctagtgatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttcttctagctc |
35262795 |
T |
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| Q |
442 |
ctcttatgttaatgatgatgatga |
465 |
Q |
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|||||||||| ||||||||||||| |
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| T |
35262796 |
ctcttatgttgatgatgatgatga |
35262819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 35262417 - 35262548
Alignment:
| Q |
84 |
ctaaagatggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactc |
177 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
35262417 |
ctaaagatggaaagtttgttgatgaaaattgtgagagggaacaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactt |
35262516 |
T |
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| Q |
178 |
tgttgattctgatgctgataatgaagaagaag |
209 |
Q |
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| T |
35262517 |
tgttgattctgatgctgataatgaagaagaag |
35262548 |
T |
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