View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_low_1 (Length: 958)
Name: NF13374_low_1
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 722; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 149 - 948
Target Start/End: Complemental strand, 2854767 - 2853968
Alignment:
| Q |
149 |
gttactttttattgtttcaatgtgcataattttgaaaataaaattttcactttaaacttctaaacaaatatcttaaggtcatttgttaacatttctctaa |
248 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
2854767 |
gttactttttattgtttcaatgtgcacaattttgaaaataaaattttcactttaaacttctaaacaaatatcttaaggtcattcgttaacatttctgtaa |
2854668 |
T |
|
| Q |
249 |
aaaataatactaaaactaatgattgacattccatactaaaaataaattagtctttgtattataatgaatgactaatttatctttagattaaaaatgtcag |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854667 |
aaaataatactaaaactaatgattgacattccatactaaaaataaattagtctttgtattataatgaatgactaatttatctttagattaaaaatgtcag |
2854568 |
T |
|
| Q |
349 |
gtgtacnnnnnnnnnncagagatgaaattgaattgtaagaaaataatgaaggaggaattttcctttgcatgtacatattcctaccagattctgaatcttt |
448 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854567 |
gtgtacttttttttttcagagatgaaattgaattgtaagaaaataatgaaggaggaattttcctttgcatgtacatattcctaccagattctgaatcttt |
2854468 |
T |
|
| Q |
449 |
accatggtatctctttgcaggcatggcattggttgcaattccatggctatcttggtttctcatcttgatatatagatgcattagacctattaatgttcaa |
548 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854467 |
accatggtatctctttgcaggcatgtcattggttgcaattccatggctatcttggtttctcatcttgatatatagatgcattagacctattaatgttcaa |
2854368 |
T |
|
| Q |
549 |
tttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggta |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854367 |
tttgatgaacatcatacaaacaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggta |
2854268 |
T |
|
| Q |
649 |
caaaatccccttctcattcccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcag |
748 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2854267 |
caaaatccccttctcattcccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggagatgaatttggtggcggcag |
2854168 |
T |
|
| Q |
749 |
cgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtct |
848 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2854167 |
cgaggaagaacaccaccataatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtct |
2854068 |
T |
|
| Q |
849 |
agataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
948 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2854067 |
agataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 398 - 948
Target Start/End: Complemental strand, 2906546 - 2905996
Alignment:
| Q |
398 |
aggaggaattttcctttgcatgtacatattcctaccagattctgaatctttaccatggtatctctttgcaggcatggcattggttgcaattccatggcta |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906546 |
aggaggaattttcctttgcatgtacatattcctaccagattctgaatctttaccatggtatctctttgcaggcatggcattggttgcaattccatggcta |
2906447 |
T |
|
| Q |
498 |
tcttggtttctcatcttgatatatagatgcattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttgga |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906446 |
tcttggtttctcatcttgatatatagatgcattagacctattaatgttcaatttgatgaacatcatacaaacaattatggtaatactggtgcaatttgga |
2906347 |
T |
|
| Q |
598 |
caccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattcccctattggtggtggcggtggagagcgtcg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
2906346 |
caccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattcccctgttggtggcggcggtggagagcgtcg |
2906247 |
T |
|
| Q |
698 |
cgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtcc |
797 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906246 |
tgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccataatgatgattttgttgagcatcatgagtcc |
2906147 |
T |
|
| Q |
798 |
aaaaaagaacaagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacat |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2906146 |
aaaaaagaacaagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacat |
2906047 |
T |
|
| Q |
898 |
ggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
948 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906046 |
ggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 2854857 - 2854811
Alignment:
| Q |
18 |
gaatgcacaatttctaagataaaattaaaaattgttgttcttattaa |
64 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2854857 |
gaatgtacaatttctaagataaaattaaaaattgttgttcttattaa |
2854811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 5221040 - 5221140
Alignment:
| Q |
149 |
gttactttttattgtttcaatgt-------gcataattttgaaaataaaattttcactttaaacttctaaacaaatatcttaaggtcatttgttaacatt |
241 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5221040 |
gttactttttattgtttcaatgtcttaaatgcacaatttataaaataaatattttactttaaacttctaaacaaatgtcttaaggacatttgttaacatt |
5221139 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
5221140 |
t |
5221140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 36178486 - 36178445
Alignment:
| Q |
171 |
tgcataattttgaaaataaaattttcactttaaacttctaaa |
212 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||| |
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| T |
36178486 |
tgcacaatttttaagataaaattttcactttaaacttctaaa |
36178445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 44084045 - 44083991
Alignment:
| Q |
160 |
ttgtttcaatgtgcataattttgaaaataaaattttcactttaaacttctaaacaa |
215 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44084045 |
ttgtttcaatgt-cacaatttttaaaataaaattttcactttaaacttctaaacaa |
44083991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 41983040 - 41983003
Alignment:
| Q |
176 |
aattttgaaaataaaattttcactttaaacttctaaac |
213 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
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|
| T |
41983040 |
aattttcaatataaaattttcactttaaacttctaaac |
41983003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 8701079 - 8701010
Alignment:
| Q |
173 |
cataattttgaaaataaaattttcactttaaacttctaaacaaatatcttaaggtcatttgttaacattt |
242 |
Q |
| |
|
||||||||| || |||||||||| | ||||||||||| ||||| | || |||||| | |||||||||||| |
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| T |
8701079 |
cataatttttaagataaaatttttattttaaacttcttaacaagtctcataaggtaacttgttaacattt |
8701010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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