View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_low_10 (Length: 474)
Name: NF13374_low_10
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 250 - 459
Target Start/End: Original strand, 3110098 - 3110308
Alignment:
| Q |
250 |
gagtagttacaagtgagaagcaattatttatttacttt-caagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctt |
348 |
Q |
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| T |
3110098 |
gagtaattacaagtgagaagcaattatttatttacttcacaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctt |
3110197 |
T |
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| Q |
349 |
tgcaccttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtc |
448 |
Q |
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| T |
3110198 |
tgcaccttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtc |
3110297 |
T |
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| Q |
449 |
taataggatga |
459 |
Q |
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| T |
3110298 |
taataggatga |
3110308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 256 - 459
Target Start/End: Complemental strand, 26271681 - 26271477
Alignment:
| Q |
256 |
ttacaagtgagaagcaattatttatttactt-tcaagcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
354 |
Q |
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| T |
26271681 |
ttacaagtgagaatcaattatttatttgattctcatgcacctaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcacc |
26271582 |
T |
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| Q |
355 |
ttctttcttccattcattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaagaacatgattccctttacgtctaatag |
454 |
Q |
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| T |
26271581 |
ttctttcttccatacattcccatttgttctcttgccaatcggttttcaagtaaaaactcaagattttgagcaaggacatgattccctttacgtctaatag |
26271482 |
T |
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| Q |
455 |
gatga |
459 |
Q |
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| T |
26271481 |
gatga |
26271477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 433
Target Start/End: Complemental strand, 44065123 - 44064981
Alignment:
| Q |
291 |
gcacgtaacaagaacctctacaaatttactatacatgtgctccttcaaatacatcctttgcaccttctttcttccattcattcccatttgttctcttgcc |
390 |
Q |
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|||| |||||| |||||| |||||||| |||||||||| | ||||||||||||||| | |||||| || || || | || |||||||| | |||||| |
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| T |
44065123 |
gcacctaacaataacctcaacaaatttcttatacatgtgttgcttcaaatacatcctctccacctttttcctgccttctatccccatttgcttccttgcc |
44065024 |
T |
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| Q |
391 |
aatcggttttcaagtaaaaactcaagattttgagcaagaacat |
433 |
Q |
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| T |
44065023 |
aactggtttttaagtaaatacagaagattctgtgcaaggacat |
44064981 |
T |
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