View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_low_13 (Length: 355)
Name: NF13374_low_13
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 44109892 - 44109554
Alignment:
| Q |
7 |
aagttagcggatagaagtaatatcactgttttagcatttaaatgaggcagattaagcaggatataaggcgtaccagaggaacaacaagagtttccagttt |
106 |
Q |
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| T |
44109892 |
aagttagcggatagaagtaatatcactgttttaacatttaaatgaggcagattaagcaggatataaggcgtaccagaggaacaacaagagtttccagttt |
44109793 |
T |
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| Q |
107 |
aggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggaga |
206 |
Q |
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| T |
44109792 |
aggacaccttaagaggaattccagtactgtttttatagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaaggaga |
44109693 |
T |
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| Q |
207 |
tggagatgatcaattgcatagaaaggatactnnnnnnnntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacgc |
306 |
Q |
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| T |
44109692 |
tggagatgatcaattgcatagagaggatcct-aaaaaaatgaaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaatacac |
44109594 |
T |
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| Q |
307 |
attatattatacacaatatttaaaaagataaatgatgatg |
346 |
Q |
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| T |
44109593 |
attatattatacacaatatttaaaaagataaatgatgatg |
44109554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 40276806 - 40276460
Alignment:
| Q |
7 |
aagttagcggatagaagtaa-tatcactgttttagcatttaaatgaggcagattaagcaggatataa----ggcgtaccagaggaacaacaagagtttcc |
101 |
Q |
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| T |
40276806 |
aagttagtggatagaagtaaatatcattgttttaacaatgaaatgagacagattaagcaggatataattaaggtgtacctgaggaaaaacaagagcttcc |
40276707 |
T |
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| Q |
102 |
agtttaggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatcctccgatgcagacaaagatgtgtcaaattgtggaactcgggaa |
201 |
Q |
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| T |
40276706 |
aatttaggacaccttaagaggaattccattaatgtttttctactgaa---gataatctccaaatccagacaaagatgtgtcaaattgtggagctcaggaa |
40276610 |
T |
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| Q |
202 |
ggagatggagatgatcaattgcatagaaaggatactnnnnnnnntgtaacagaaatagatttgcatgggaaacacaactaaaggcaacattgcgcatcaa |
301 |
Q |
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| T |
40276609 |
ggggatggagatgatcaattacatagagaggttcctagtaaaag-gaaacaacaatagacttgcatgggaaacacagccaaaggcaacattgtgcgtcaa |
40276511 |
T |
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| Q |
302 |
tacgc-----attatattatacacaatatttaaaaagataaatgatgatgt |
347 |
Q |
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| T |
40276510 |
tacgcatcttattatattatacacaatatttaaaaagataaatgaagatgt |
40276460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 40450544 - 40450710
Alignment:
| Q |
59 |
taagcaggatataaggcgtaccagaggaacaacaagagtttccagtttaggacaccttaagaggaattccagtattgtttttctagtgaaaggtttaatc |
158 |
Q |
| |
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|||| ||||||||||| |||||||||| | |||||| | |||||||||||||||||||| ||| ||||||| || |||||||||| |||| | |||| |
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| T |
40450544 |
taagaaggatataaggtgtaccagaggtaaaacaagtgcttccagtttaggacaccttaggagaaattccattaatgtttttctactgaag---tcaatc |
40450640 |
T |
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| Q |
159 |
ctccgatg-cagacaaagatgtgtcaaattgtggaactcgggaaggagatggagatgatcaattgcataga |
228 |
Q |
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| T |
40450641 |
-tccaaagtcagacaaagatgtgtcaaattgtggaactcaggaaggagatggagatgatcaattacataga |
40450710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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