View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_low_16 (Length: 319)
Name: NF13374_low_16
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 39996896 - 39996584
Alignment:
| Q |
7 |
ccaagaatatacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgt |
106 |
Q |
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| T |
39996896 |
ccaacaatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgt |
39996797 |
T |
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| Q |
107 |
tttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgtt |
206 |
Q |
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| T |
39996796 |
tttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgtt |
39996697 |
T |
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| Q |
207 |
aacattatccgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatgttccactg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39996696 |
aacattatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactg |
39996597 |
T |
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| Q |
307 |
gttatcgttcaac |
319 |
Q |
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|||||| |||||| |
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| T |
39996596 |
gttatctttcaac |
39996584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 53036708 - 53037009
Alignment:
| Q |
16 |
tacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccac |
115 |
Q |
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|||||||||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
53036708 |
tacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccac |
53036807 |
T |
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| Q |
116 |
ttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatc |
215 |
Q |
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| T |
53036808 |
tagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatc |
53036907 |
T |
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| Q |
216 |
cgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatgttccactggttatcgtt |
315 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||| ||| |
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| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgtt |
53037007 |
T |
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| Q |
316 |
ca |
317 |
Q |
| |
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|| |
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| T |
53037008 |
ca |
53037009 |
T |
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