View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_low_18 (Length: 259)
Name: NF13374_low_18
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43294592 - 43294355
Alignment:
| Q |
1 |
aaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctatatctttaccactttcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294592 |
aaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctatatctttaccactttcacc |
43294493 |
T |
|
| Q |
101 |
atataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtgactagtgagtgagtagtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43294492 |
atataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtgactagt----gagtagtaa |
43294397 |
T |
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| Q |
201 |
ggataagaatataggtgttaagtttatattgtgggaataact |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294396 |
ggataagaatataggtgttaagtttatattgtgggaataact |
43294355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44026360 - 44026597
Alignment:
| Q |
1 |
aaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctatatctttaccactttcacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026360 |
aaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattccctttctatcttagtttctatatctttaccactttcacc |
44026459 |
T |
|
| Q |
101 |
atataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtgactagtgagtgagtagtaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44026460 |
atataatataatattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaacttatacttgagttatagtgact----agtgagtagtaa |
44026555 |
T |
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| Q |
201 |
ggataagaatataggtgttaagtttatattgtgggaataact |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026556 |
ggataagaatataggtgttaagtttatattgtgggaataact |
44026597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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