View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13374_low_2 (Length: 908)

Name: NF13374_low_2
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13374_low_2
NF13374_low_2
[»] chr7 (12 HSPs)
chr7 (205-682)||(5895313-5895799)
chr7 (684-891)||(5895063-5895269)
chr7 (16-170)||(5895834-5895988)
chr7 (50-116)||(18375653-18375718)
chr7 (569-641)||(5880924-5880996)
chr7 (301-395)||(5881409-5881503)
chr7 (50-115)||(9230649-9230714)
chr7 (50-115)||(25024772-25024837)
chr7 (50-113)||(25491496-25491559)
chr7 (50-116)||(9557938-9558004)
chr7 (50-115)||(19400232-19400297)
chr7 (58-115)||(25253275-25253332)
[»] chr4 (7 HSPs)
chr4 (50-115)||(31002587-31002652)
chr4 (50-116)||(17359382-17359448)
chr4 (54-115)||(4325665-4325726)
chr4 (50-115)||(24104464-24104529)
chr4 (78-117)||(10058706-10058745)
chr4 (58-115)||(3074627-3074684)
chr4 (29-86)||(29370382-29370439)
[»] chr8 (5 HSPs)
chr8 (50-115)||(24592197-24592262)
chr8 (50-115)||(13152254-13152319)
chr8 (50-115)||(21958764-21958829)
chr8 (78-115)||(36406378-36406415)
chr8 (50-115)||(40145870-40145935)
[»] chr3 (8 HSPs)
chr3 (50-115)||(17073852-17073917)
chr3 (51-112)||(9743519-9743580)
chr3 (50-116)||(24130362-24130428)
chr3 (50-116)||(24988672-24988738)
chr3 (50-115)||(3856727-3856792)
chr3 (78-115)||(12910021-12910058)
chr3 (78-115)||(14461260-14461297)
chr3 (78-115)||(37516816-37516853)
[»] chr1 (9 HSPs)
chr1 (51-113)||(26272791-26272853)
chr1 (50-115)||(30055071-30055136)
chr1 (78-119)||(33468856-33468897)
chr1 (50-119)||(48606469-48606537)
chr1 (50-116)||(30558865-30558930)
chr1 (49-115)||(48900640-48900706)
chr1 (78-115)||(25007653-25007690)
chr1 (50-119)||(42309895-42309964)
chr1 (78-115)||(44305601-44305638)
[»] chr5 (2 HSPs)
chr5 (50-115)||(15730833-15730898)
chr5 (50-117)||(22542148-22542215)
[»] chr2 (5 HSPs)
chr2 (54-114)||(30547179-30547239)
chr2 (50-113)||(35649537-35649600)
chr2 (78-115)||(1542854-1542891)
chr2 (78-115)||(13203957-13203994)
chr2 (51-116)||(27925604-27925669)
[»] scaffold0198 (1 HSPs)
scaffold0198 (62-116)||(1658-1712)
[»] chr6 (1 HSPs)
chr6 (50-116)||(30621415-30621481)
[»] scaffold0015 (1 HSPs)
scaffold0015 (50-115)||(214019-214084)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 205 - 682
Target Start/End: Complemental strand, 5895799 - 5895313
Alignment:
Q  205 aagaagaaaggataaaagaatccaaatccctaaaaccctattttccatttccttctttccctcactcaaaatctcattccttcaattggttctttcacaa 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895799 aagaagaaaggataaaagaatccaaatccctaaaaccctagtttccatttccttctttccctcactcaaaatctcattccttcaattggttctttcacaa 5895700  T
Q  305 caatgacaaatcaatgttctgttcttcaacttcttcttcgcactcaccacaaaattcccaatcaatctcttccactttgcactttctcttccattcccaa 404  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895699 caatgacaaatcaatgttccgttcttcaacttcttcttcgcactcaccacaaaattcccaatcaatctcttccactttgcactttctcttccattcccaa 5895600  T
Q  405 caccagccattccaaattccatacaaaccctaatgtcaaccatttctcttccgaacc--------ctaataccatggatatattctcaaaactcaaatat 496  Q
    ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| ||| ||||||||||||||||||||||||||    
T  5895599 cacctaccattccaaattccatacaaaccctaatttcaaccatttctcttccgaacccgttctcgctaacaccgtggatatattctcaaaactcaaatat 5895500  T
Q  497 cttagtgccatcaacaaagacctcgatttaaatcacgtttcgattagtcacgctgctgttaacgcaaggaagtttgaaaagggtggaatggatggtgagg 596  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||    
T  5895499 cttagtgccatcaacaaagacctcgattcaaatcacgtttcgattagtcacgatgctgtcaacggaaggaagtttgaaaagtgtggaatggatggtgagg 5895400  T
Q  597 ctgtgaaatccatggaattgtttgataaggatacatttgagaggatatattctcg-caaatatttcaaattcgccaccctttatcaa 682  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||| |||||| |||||||    
T  5895399 ctgtgaaatccagggaattgtttgataaggatagatttgagaggatatattctcgaaaaaaatttcaaattccccaccccttatcaa 5895313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 684 - 891
Target Start/End: Complemental strand, 5895269 - 5895063
Alignment:
Q  684 atttgttgagttggccttgcaaaatttagaatatgcgccgaataaagctctaatatttttcaggtgggtggagaagagtgggcaatttaagcatgacgaa 783  Q
    |||||||||||||||||| |||||||||||| ||| ||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5895269 atttgttgagttggccttacaaaatttagaa-atgtgcctagtaaagctttaatatttttcaggtgggtggagaagagtgggcagtttaagcatgacgaa 5895171  T
Q  784 ctaaagcacactaagatggcgatgattcttcaaagcgagtatttgattgatcagttttggaagttagtttatgatatgaggagtgctggattcaagatag 883  Q
    |  ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895170 cgtaagtatactaagatggcgatgattcttcaaagcgagtatttgattgatcagttttggaagttagtttatgatatgaggagtgctggattcaagatag 5895071  T
Q  884 gagaaaat 891  Q
    ||||||||    
T  5895070 gagaaaat 5895063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 5895988 - 5895834
Alignment:
Q  16 atcagcccatattcgccacaacccatagtttctctatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| || | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||    
T  5895988 atcagcccagatccaccacaacccatactttctctatgt-acatgtgaatttgcagtcaaaattttgcccatactctacaaaatccttggctctgccact 5895890  T
Q  116 agtttgaatggccgtgaaaaagcataaatatc-acctactccaagttctgaaagcc 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5895889 agtttgaatggccgtgaaaaagcataaatatctacctactccaagttcagaaagcc 5895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 18375653 - 18375718
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  18375653 tatgtcacatgtga-tttgctgtcaaaattttacccatactctacaaaattcctggctccgccacta 18375718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 5880996 - 5880924
Alignment:
Q  569 tttgaaaagggtggaatggatggtgaggctgtgaaatccatggaattgtttgataaggatacatttgagagga 641  Q
    |||||||||||||||||| ||||||| |||||||| |  | ||| |||||||||||||||||| |||||||||    
T  5880996 tttgaaaagggtggaatgaatggtgatgctgtgaagttgaaggagttgtttgataaggatacagttgagagga 5880924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 5881503 - 5881409
Alignment:
Q  301 acaacaatgacaaatcaatgttctgttcttcaacttcttcttcgcactcaccacaaaattcccaatcaatctcttccactttgcactttctcttc 395  Q
    |||||||||| |||||||||     ||||||| |||||||||||||||||||||||||| |||| ||||||||   ||||| || ||||||||||    
T  5881503 acaacaatgagaaatcaatggcgcattcttcatcttcttcttcgcactcaccacaaaatccccattcaatctcacacacttcgctctttctcttc 5881409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 9230649 - 9230714
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||||||||||||| ||||||||||||||| |||  | |||||| || |||||||||||    
T  9230649 tatgtcacatgtgaatttgcaatcaaaattttgcccaggcttgataaaatttctagctccgccact 9230714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 25024772 - 25024837
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||| |||||||||||| || |||||||||| ||  ||||| |||||||||||||||||||||    
T  25024772 tatgtcatatgtgaatttgcggttaaaattttgctcagactctataaaattcctggctccgccact 25024837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 25491559 - 25491496
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcca 113  Q
    |||||||||||| ||||||| || |||||||||||||  ||||| |||||  ||||||||||||    
T  25491559 tatgtcacatgtaaatttgcggttaaaattttgcccagactctataaaatatctggctccgcca 25491496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 9557938 - 9558004
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||| ||||||| ||||||||||||| ||  ||| | |||||| ||| |||||||||||    
T  9557938 tatgtcacatgtaaatttgcggtcaaaattttgctcagactcgataaaatttctgactccgccacta 9558004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 19400232 - 19400297
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||  | ||  ||||||||| |||||| |||||| ||||||||||||||    
T  19400232 tatgtcacatatgaatttgcgataaactttttgcccaggctctataaaatttctggctccgccact 19400297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 25253275 - 25253332
Alignment:
Q  58 atgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||| |||||| ||||||| | |||||||||||||  || ||||||||||    
T  25253275 atgtgaatttgcggtcaaatttttgcctaggctctacaaaatttttgactccgccact 25253332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 31002652 - 31002587
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||||||||||    
T  31002652 tatgtcacatgtgaatttgcggtcaaaattttgcccaggctctacaaaatttatggctccgccact 31002587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 17359382 - 17359448
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||| |||||    
T  17359382 tatgtcacatgtgaatttgcagtcaaaattttgcacatgctcgataaaattccttgctccgtcacta 17359448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 4325665 - 4325726
Alignment:
Q  54 tcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||| ||||||| ||||||||||||||||||||| |  ||||| ||||||||||||||    
T  4325665 tcacatgtaaatttgcggtcaaaattttgcccatgctcgatgaaatttctggctccgccact 4325726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 24104529 - 24104464
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||| ||| ||||||||||| |||| |||| | ||||||  |||||||||||||    
T  24104529 tatgtcacatgtgaatatgcggtcaaaattttacccaagctcgataaaatttatggctccgccact 24104464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 10058706 - 10058745
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccactag 117  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  10058706 ttttgcccaggctctataaaattcctggctccgccactag 10058745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3074627 - 3074684
Alignment:
Q  58 atgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| ||||||||||||| ||||  ||| | ||||||||| |||||||||||    
T  3074627 atgtgaatttacagtcaaaattttacccagactcgataaaattcctagctccgccact 3074684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 29370382 - 29370439
Alignment:
Q  29 cgccacaacccatagtttctctatgtcacatgtgaatttgcagtcaaaattttgccca 86  Q
    |||||||||||||| ||||| ||| |||||| | ||||| | ||||||||||||||||    
T  29370382 cgccacaacccatactttctttatatcacatataaatttacggtcaaaattttgccca 29370439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 24592262 - 24592197
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||||| | || |||||||||| || |||||| |||||||||||||||||||||    
T  24592262 tatgtcacatgtgaatttacggttaaaattttgctcaggctctataaaattcctggctccgccact 24592197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 13152319 - 13152254
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||| |||||||||||||  |||||||||||||||  ||| | ||||||||| |||||||||||    
T  13152319 tatgtcgcatgtgaatttgcgatcaaaattttgcccagactcgataaaattcctagctccgccact 13152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 21958764 - 21958829
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||  | ||  ||||||||| |||||| ||||||||| |||||||||||    
T  21958764 tatgtcacatatgaatttgcgataaactttttgcccaagctctataaaattcctagctccgccact 21958829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 36406415 - 36406378
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  36406415 ttttgcccaggctctataaaattcctggctccgccact 36406378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 40145935 - 40145870
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| | ||||||| ||||||||||||||||   |||| ||||||  |||||||||||||    
T  40145935 tatgtcacatataaatttgcggtcaaaattttgcccaaaatctataaaatttatggctccgccact 40145870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 17073917 - 17073852
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||||| | |||||| |||||    
T  17073917 tatgtcacatatgaatttgcagtcaaaatttggcccatgctctataaaatttcaggctccaccact 17073852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 9743519 - 9743580
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcc 112  Q
    |||| |||||||||||||| ||||||||||||||||  || || ||||||||||||||||||    
T  9743519 atgtaacatgtgaatttgcggtcaaaattttgcccagactatataaaattcctggctccgcc 9743580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 24130428 - 24130362
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaatttt-gcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||| | |||||| |||| | |||  ||||||||||||||||||||||||||||    
T  24130428 tatgtcacatgtgaatttacggtcaaattttttggccaa-ctctacaaaattcctggctccgccacta 24130362  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 24988738 - 24988672
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||||  ||||||||||| ||||  ||||| |||||| ||| |||| ||||||    
T  24988738 tatgtcacatgtgaatttgtggtcaaaattttacccacactctataaaatttctgactccaccacta 24988672  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 3856792 - 3856727
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||||||||||||| || ||||||||   || |||| | |||||| ||||||||||||||    
T  3856792 tatgtcacatgtgaatttgcggtgaaaattttattcaggctcgataaaatttctggctccgccact 3856727  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 12910021 - 12910058
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  12910021 ttttgcccaggctctataaaattcctggctccgccact 12910058  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 14461260 - 14461297
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  14461260 ttttgcccaggctctataaaattcctggctccgccact 14461297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 37516816 - 37516853
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  37516816 ttttgcccaggctctataaaattcctggctccgccact 37516853  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 26272853 - 26272791
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcca 113  Q
    ||||||||||| ||||||| || |||| ||||||||||| ||| ||||||| |||||||||||    
T  26272853 atgtcacatgtaaatttgcggttaaaaatttgcccatgcactataaaattcatggctccgcca 26272791  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 30055071 - 30055136
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||| |||||||||||| |||||||||||| |||  ||||| ||||||| || ||||||||||    
T  30055071 tatgtcatatgtgaatttgcggtcaaaattttgtccagactctataaaattcttgactccgccact 30055136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 33468897 - 33468856
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccactagtt 119  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  33468897 ttttgcccaggctctataaaattcctggctccgccactagtt 33468856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 48606537 - 48606469
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccactagtt 119  Q
    ||||| |||||||||||||| ||||||||||||| ||  ||||| ||||||||| ||||||| |||||||    
T  48606537 tatgttacatgtgaatttgcggtcaaaattttgctcagactctataaaattcct-gctccgctactagtt 48606469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 30558930 - 30558865
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||||||||||||| |||||||||| |||| ||  ||||| |||||| ||||| |||||||||    
T  30558930 tatgtcacatgtgaatttacagtcaaaatcttgcgcaaactctataaaatttctggc-ccgccacta 30558865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 48900706 - 48900640
Alignment:
Q  49 ctatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||| |||||||||  | ||| ||||||||  ||||||  ||||||||||||||||||||    
T  48900706 ctatgtcacatttgaatttgcgattaaatttttgcccgggctctaagaaattcctggctccgccact 48900640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 25007653 - 25007690
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  25007653 ttttgcccaggctctataaaattcctggctccgccact 25007690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 42309964 - 42309895
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccactagtt 119  Q
    |||||||||||||||||| |  | ||  ||||||||| |||| | ||| |||||||||||||||||||||    
T  42309964 tatgtcacatgtgaatttacgattaattttttgcccaagctccataaatttcctggctccgccactagtt 42309895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 44305601 - 44305638
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  44305601 ttttgcccaggctctataaaattcctggctccgccact 44305638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 15730898 - 15730833
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||||||||||||||| |||||||||||| ||   |||  |||| ||||||||||||||||    
T  15730898 tatgtcacatgtgaatttgcattcaaaattttgctcagattctttaaaaatcctggctccgccact 15730833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 22542148 - 22542215
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccactag 117  Q
    ||||||| || |||||||||  | |||||||||||||  ||||| ||||||| |||||||||||||||    
T  22542148 tatgtcatatatgaatttgcgataaaaattttgcccagactctagaaaattcttggctccgccactag 22542215  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 30547179 - 30547239
Alignment:
Q  54 tcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccac 114  Q
    |||||||||||||||| ||||||||||| ||||  ||| | |||||||||| |||||||||    
T  30547179 tcacatgtgaatttgcggtcaaaattttacccaaactcaataaaattcctgactccgccac 30547239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 35649600 - 35649537
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgcca 113  Q
    ||||||||||||||||||||  | ||| |||||||||  ||||| |||||| ||||||||||||    
T  35649600 tatgtcacatgtgaatttgcgattaaatttttgcccaaactctataaaatttctggctccgcca 35649537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 1542854 - 1542891
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  1542854 ttttgcccaggctctataaaattcctggctccgccact 1542891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 13203957 - 13203994
Alignment:
Q  78 ttttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  13203957 ttttgctcatgctctataaaattcctggctccgccact 13203994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 27925669 - 27925604
Alignment:
Q  51 atgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    ||||||||||||||||||| ||||||||||||  || |||| | ||||||  |||||||| |||||    
T  27925669 atgtcacatgtgaatttgcggtcaaaattttgttcaggctcgataaaatttatggctccgtcacta 27925604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 1658 - 1712
Alignment:
Q  62 gaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||||| |||||||||||||| | | || | ||||||||||||||||||||||    
T  1658 gaatttgcggtcaaaattttgccaaagttcaataaaattcctggctccgccacta 1712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 30621415 - 30621481
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccacta 116  Q
    |||||| |||||||||||||  |||||| ||||||||  ||| | ||||||||| ||||||||||||    
T  30621415 tatgtcgcatgtgaatttgcgatcaaaactttgcccaaactcgataaaattcctagctccgccacta 30621481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 214084 - 214019
Alignment:
Q  50 tatgtcacatgtgaatttgcagtcaaaattttgcccatgctctacaaaattcctggctccgccact 115  Q
    |||||||||| |||||||||  | ||  ||||||||| |||||| ||||||||| |||||||||||    
T  214084 tatgtcacatatgaatttgcgataaactttttgcccaagctctataaaattcctagctccgccact 214019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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