View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13374_low_23 (Length: 226)

Name: NF13374_low_23
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13374_low_23
NF13374_low_23
[»] chr1 (33 HSPs)
chr1 (1-221)||(27124031-27124251)
chr1 (11-128)||(6596601-6596718)
chr1 (33-129)||(13579423-13579519)
chr1 (70-128)||(29568078-29568136)
chr1 (14-91)||(18428364-18428440)
chr1 (7-128)||(23690264-23690385)
chr1 (71-128)||(26594980-26595037)
chr1 (28-128)||(28410729-28410829)
chr1 (20-117)||(12124564-12124658)
chr1 (70-128)||(26352002-26352060)
chr1 (70-121)||(14373341-14373392)
chr1 (70-128)||(8989550-8989608)
chr1 (70-128)||(27209547-27209605)
chr1 (71-121)||(52707025-52707075)
chr1 (69-130)||(38947774-38947835)
chr1 (84-128)||(14593268-14593312)
chr1 (70-117)||(7190978-7191025)
chr1 (71-130)||(12484547-12484606)
chr1 (70-121)||(18794460-18794511)
chr1 (15-82)||(28706823-28706890)
chr1 (70-121)||(34047161-34047212)
chr1 (70-117)||(44556991-44557038)
chr1 (82-128)||(5172-5218)
chr1 (71-117)||(2610758-2610804)
chr1 (70-128)||(8894926-8894984)
chr1 (75-117)||(48920411-48920453)
chr1 (71-128)||(5225740-5225797)
chr1 (7-100)||(44707605-44707697)
chr1 (20-101)||(46298793-46298874)
chr1 (70-118)||(8565935-8565982)
chr1 (76-128)||(9092768-9092820)
chr1 (70-118)||(44938503-44938551)
chr1 (70-118)||(50249482-50249530)
[»] chr7 (25 HSPs)
chr7 (3-128)||(44057532-44057657)
chr7 (6-101)||(32097135-32097230)
chr7 (22-126)||(34782456-34782560)
chr7 (69-128)||(25055961-25056020)
chr7 (6-100)||(35850382-35850477)
chr7 (70-120)||(4268914-4268964)
chr7 (70-128)||(42286080-42286138)
chr7 (53-117)||(4088538-4088602)
chr7 (6-128)||(39136000-39136128)
chr7 (20-90)||(5078854-5078924)
chr7 (70-121)||(10476322-10476373)
chr7 (71-118)||(28289398-28289445)
chr7 (70-128)||(30312717-30312775)
chr7 (70-128)||(37490969-37491027)
chr7 (71-128)||(47461286-47461343)
chr7 (24-128)||(26963618-26963722)
chr7 (70-130)||(48843737-48843797)
chr7 (12-128)||(2406494-2406611)
chr7 (70-129)||(12977606-12977665)
chr7 (70-121)||(35778696-35778747)
chr7 (71-125)||(6563332-6563386)
chr7 (70-128)||(18270750-18270808)
chr7 (71-129)||(34274967-34275025)
chr7 (82-118)||(29635860-29635896)
chr7 (82-118)||(40348693-40348729)
[»] chr4 (21 HSPs)
chr4 (27-113)||(1019037-1019123)
chr4 (20-124)||(11458271-11458375)
chr4 (12-88)||(39009534-39009610)
chr4 (70-133)||(44061176-44061239)
chr4 (20-124)||(11528331-11528435)
chr4 (70-121)||(19451128-19451179)
chr4 (33-111)||(12241344-12241422)
chr4 (70-128)||(34413463-34413521)
chr4 (68-113)||(50203254-50203299)
chr4 (69-128)||(41496386-41496445)
chr4 (70-128)||(45839819-45839875)
chr4 (70-128)||(7905923-7905981)
chr4 (70-128)||(37624728-37624786)
chr4 (71-113)||(39009651-39009693)
chr4 (70-128)||(47817921-47817979)
chr4 (22-128)||(50317494-50317600)
chr4 (76-129)||(10573069-10573122)
chr4 (70-128)||(6991179-6991237)
chr4 (70-128)||(22220286-22220344)
chr4 (76-118)||(24157310-24157352)
chr4 (70-128)||(38510172-38510230)
[»] chr8 (26 HSPs)
chr8 (15-128)||(32336678-32336790)
chr8 (12-131)||(41178169-41178288)
chr8 (14-117)||(45191958-45192061)
chr8 (14-98)||(2355165-2355249)
chr8 (32-119)||(26432248-26432335)
chr8 (3-118)||(37109322-37109435)
chr8 (13-113)||(2271375-2271475)
chr8 (69-120)||(5295327-5295378)
chr8 (69-128)||(13367863-13367922)
chr8 (29-100)||(38075305-38075376)
chr8 (70-128)||(12339894-12339952)
chr8 (71-129)||(24245129-24245187)
chr8 (29-101)||(7421412-7421484)
chr8 (33-101)||(32414883-32414951)
chr8 (50-121)||(53582-53652)
chr8 (69-128)||(515083-515142)
chr8 (70-128)||(396137-396195)
chr8 (39-117)||(27304145-27304222)
chr8 (12-128)||(9419986-9420102)
chr8 (70-121)||(6115924-6115975)
chr8 (19-90)||(18673049-18673120)
chr8 (12-130)||(22699518-22699641)
chr8 (71-141)||(35233712-35233782)
chr8 (70-128)||(34796595-34796652)
chr8 (71-128)||(31233857-31233914)
chr8 (70-118)||(9812355-9812403)
[»] chr5 (23 HSPs)
chr5 (3-126)||(39691134-39691257)
chr5 (12-117)||(10437347-10437452)
chr5 (51-125)||(11970357-11970431)
chr5 (70-128)||(1309271-1309329)
chr5 (70-128)||(21634293-21634351)
chr5 (70-128)||(21642540-21642598)
chr5 (70-128)||(11977770-11977828)
chr5 (70-128)||(34534541-34534599)
chr5 (70-119)||(13974456-13974505)
chr5 (76-117)||(32535175-32535216)
chr5 (71-127)||(4911023-4911079)
chr5 (71-128)||(34381713-34381770)
chr5 (70-118)||(7721270-7721318)
chr5 (70-118)||(38370054-38370102)
chr5 (71-135)||(43584292-43584356)
chr5 (80-127)||(24424885-24424932)
chr5 (76-130)||(7736563-7736617)
chr5 (70-128)||(10344855-10344913)
chr5 (91-128)||(9065576-9065613)
chr5 (84-121)||(38362059-38362096)
chr5 (70-121)||(14161819-14161871)
chr5 (24-128)||(27652231-27652335)
chr5 (57-113)||(39803615-39803671)
[»] chr3 (29 HSPs)
chr3 (3-126)||(46160784-46160906)
chr3 (25-118)||(54918219-54918312)
chr3 (12-128)||(19897412-19897528)
chr3 (7-113)||(28854450-28854557)
chr3 (3-93)||(26187246-26187334)
chr3 (70-129)||(36844651-36844710)
chr3 (3-101)||(26243827-26243925)
chr3 (69-119)||(31190657-31190707)
chr3 (70-117)||(7230815-7230862)
chr3 (22-128)||(21205537-21205641)
chr3 (70-128)||(27067783-27067839)
chr3 (69-120)||(47823336-47823387)
chr3 (70-128)||(11337532-11337590)
chr3 (70-128)||(30315492-30315550)
chr3 (69-127)||(50646052-50646110)
chr3 (33-115)||(2508802-2508886)
chr3 (70-131)||(6084736-6084797)
chr3 (69-129)||(790254-790314)
chr3 (33-133)||(2985429-2985529)
chr3 (70-128)||(3986033-3986089)
chr3 (5-60)||(10456591-10456646)
chr3 (70-121)||(48901889-48901940)
chr3 (70-112)||(40717298-40717340)
chr3 (71-121)||(42072168-42072218)
chr3 (70-135)||(22857238-22857303)
chr3 (70-123)||(44064380-44064433)
chr3 (33-118)||(48169583-48169668)
chr3 (69-125)||(8817322-8817378)
chr3 (14-101)||(26244528-26244616)
[»] chr2 (28 HSPs)
chr2 (20-123)||(44194898-44195001)
chr2 (6-128)||(6247818-6247940)
chr2 (17-92)||(18248836-18248911)
chr2 (6-123)||(15524335-15524456)
chr2 (17-117)||(1198673-1198773)
chr2 (3-121)||(1756848-1756966)
chr2 (20-94)||(4603218-4603291)
chr2 (69-128)||(33056072-33056131)
chr2 (24-130)||(681677-681783)
chr2 (70-128)||(15083081-15083139)
chr2 (71-125)||(19164537-19164591)
chr2 (70-128)||(35799398-35799456)
chr2 (70-123)||(8540221-8540274)
chr2 (70-119)||(12565392-12565441)
chr2 (71-119)||(7872700-7872748)
chr2 (70-129)||(11188161-11188220)
chr2 (70-128)||(43971958-43972016)
chr2 (70-128)||(45423790-45423848)
chr2 (88-128)||(40608519-40608559)
chr2 (26-101)||(30544343-30544418)
chr2 (84-127)||(34456069-34456112)
chr2 (3-82)||(34456428-34456507)
chr2 (27-128)||(983666-983765)
chr2 (70-128)||(27986210-27986268)
chr2 (70-128)||(28072742-28072800)
chr2 (71-121)||(37038689-37038739)
chr2 (70-130)||(4051675-4051735)
chr2 (71-126)||(36685656-36685712)
[»] scaffold0123 (1 HSPs)
scaffold0123 (12-101)||(27963-28052)
[»] chr6 (19 HSPs)
chr6 (12-128)||(26405188-26405304)
chr6 (7-119)||(24639750-24639862)
chr6 (71-121)||(12459238-12459288)
chr6 (70-128)||(21271315-21271373)
chr6 (69-121)||(32193990-32194042)
chr6 (70-128)||(3988657-3988715)
chr6 (70-128)||(32429459-32429517)
chr6 (70-129)||(4850417-4850476)
chr6 (82-121)||(8957964-8958003)
chr6 (82-121)||(8961354-8961393)
chr6 (70-128)||(13011260-13011318)
chr6 (70-112)||(17828465-17828507)
chr6 (70-128)||(20226133-20226191)
chr6 (70-128)||(22120117-22120175)
chr6 (70-128)||(29400117-29400175)
chr6 (70-128)||(34439320-34439378)
chr6 (71-128)||(29915726-29915783)
chr6 (72-101)||(31767987-31768016)
chr6 (70-118)||(13503766-13503814)
[»] scaffold0026 (1 HSPs)
scaffold0026 (71-121)||(4324-4374)
[»] scaffold0246 (1 HSPs)
scaffold0246 (20-116)||(15456-15553)
[»] scaffold0300 (1 HSPs)
scaffold0300 (70-121)||(4745-4796)
[»] scaffold0332 (1 HSPs)
scaffold0332 (70-128)||(3733-3791)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27124031 - 27124251
Alignment:
Q  1 tgaaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27124031 tgaaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtatgtaaaaaccttaaa 27124130  T
Q  101 caacattcattttaaaacggatggagtactaaattgtcattcaatatagatannnnnnnatattcaactacaaattagnnnnnnnnaagataaaaattag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||        ||||||||||||||    
T  27124131 caacattcattttaaaacggatggagtactaaattgtcattcaatatagatatttttttatattcaactacaaattagttttttttaagataaaaattag 27124230  T
Q  201 tagtctaattaggttatgttt 221  Q
    |||||||||||||||||||||    
T  27124231 tagtctaattaggttatgttt 27124251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 6596601 - 6596718
Alignment:
Q  11 taccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcat 110  Q
    |||||||| ||||||||||| |||| ||||||||||||| ||||||||||  | ||  |||||||||||||||||| |||||| ||||||||||| ||||    
T  6596601 taccaatagtaaataaggtttgtttggtaaaattgtcatttcttttgacattactagtacatttcttaatttgtgtctaaaaatcttaaacaacactcat 6596700  T
Q  111 tttaaaacggatggagta 128  Q
    ||| ||||| ||||||||    
T  6596701 tttgaaacgaatggagta 6596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 13579519 - 13579423
Alignment:
Q  33 tttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    |||||||||| |||| ||||||| |||| |||||| |||||||||||| ||||||||| |||||||||| |||||| |||| || |||| |||||||    
T  13579519 tttagtaaaagtgtcctgtctttggacaacattattacatttcttaatatgtgtgtaacaaccttaaacgacattcgttttgaagcggagggagtac 13579423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 29568078 - 29568136
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  29568078 catttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaacggatggagta 29568136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 18428440 - 18428364
Alignment:
Q  14 caataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaa 91  Q
    ||||| ||||||||| ||||||  |||| |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  18428440 caatagtaaataaggctagtttgataaa-ttgtcatgtcttttgacatcattattacatttcttaatttgtgtgtaaa 18428364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 23690264 - 23690385
Alignment:
Q  7 attataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacat 106  Q
    |||| ||||||| ||||||| ||||||||  |||||||||||  | |||||||||||| || |||||| ||||| |   | |||||||||||||| ||||    
T  23690264 attacaccaatagtaaataaagttagtttgataaaattgtcaaattttttgacaccatcattacattttttaatatacatataaaaaccttaaacgacat 23690363  T
Q  107 tcattttaaaacggatggagta 128  Q
     ||||| |||||||||||||||    
T  23690364 ccatttcaaaacggatggagta 23690385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 26595037 - 26594980
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  26595037 atttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaacggagggagta 26594980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 28410829 - 28410729
Alignment:
Q  28 gttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagt 127  Q
    |||| |||||||||| || ||| ||||| || | ||||||  ||||||||||| ||||||||| ||| |||||| ||||||||||| ||||||| |||||    
T  28410829 gttattttagtaaaagtgacatatctttggataacattattgcatttcttaatatgtgtgtaacaactttaaacgacattcattttgaaacggagggagt 28410730  T
Q  128 a 128  Q
    |    
T  28410729 a 28410729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 12124658 - 12124564
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    |||||||||||| |||| |||||| ||| |||||||||||||||| |  |||||||||||| |||||   |||||||||||| ||| | |||||||||    
T  12124658 taaataaggttaatttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgt---aaaaccttaaacgacacttattttaaaa 12124564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 26352060 - 26352002
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||||||||||||||||||    
T  26352060 catttcttaatatgtgtgtaaacacctaaaacgacactcattttaaaacggatggagta 26352002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 14373392 - 14373341
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| |||||||||| |||| |||| |||||||||||||||||||    
T  14373392 catttcttaatatgtgtgtaaacacctaaaacgacattcattttaaaacgga 14373341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 8989608 - 8989550
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||||||||||| |||| | ||||| ||||||| ||||||||||||    
T  8989608 catttcttaatatgtgtgtaaaaactttaatcgacatttattttaagacggatggagta 8989550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 27209547 - 27209605
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||| ||| ||| ||||||    
T  27209547 cattttttaatatgtgtgtaaaaaccttaaacaacactcattttgaaatggagggagta 27209605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 52707025 - 52707075
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||| |||||||||||| ||||||| || ||||||||||||||||    
T  52707025 atttcttaatatgtgtgtaaaaatcttaaaccacgttcattttaaaacgga 52707075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 38947774 - 38947835
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtact 130  Q
    ||||||||||||  |||||| ||||| |||||| ||||| |||||||||||||| |||||||    
T  38947774 acatttcttaataggtgtgtgaaaacattaaacgacatttattttaaaacggattgagtact 38947835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 14593312 - 14593268
Alignment:
Q  84 tgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||    
T  14593312 tgtgtaaaaacctaaaacaacactcattttaaaacggagggagta 14593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 7191025 - 7190978
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    ||||||||||| ||||||||||||| ||| || |||||||||||||||    
T  7191025 catttcttaatatgtgtgtaaaaacattagacgacattcattttaaaa 7190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 12484606 - 12484547
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtact 130  Q
    |||||||||| ||||||||||||||||||||  ||||||||||  ||| || ||||||||    
T  12484606 atttcttaatatgtgtgtaaaaaccttaaacggcattcattttgtaacagagggagtact 12484547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 18794511 - 18794460
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||| ||||| ||||||||||||  |||||| |||||||||||||||||||    
T  18794511 catttattaatatgtgtgtaaaaatattaaacgacattcattttaaaacgga 18794460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 28706823 - 28706890
Alignment:
Q  15 aataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaattt 82  Q
    ||||||||||||  |||||||||||||||| |||||| |||| |||  ||||| |||||| |||||||    
T  28706823 aataataaataatattagtttagtaaaattatcatgtattttaacataattattacattttttaattt 28706890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 34047212 - 34047161
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| |||||||||| |||| |||| ||| |||||||||||||||    
T  34047212 catttcttaatatgtgtgtaaacacctaaaacgacactcattttaaaacgga 34047161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 44557038 - 44556991
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||||    
T  44557038 cattttttaatatgtgtataaaaaccttaaacgacattcattttaaaa 44556991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 5172 - 5218
Alignment:
Q  82 tgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  5172 tgtgtgtaaaaacctcaaatgacattcattttaaaacggagggagta 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 2610804 - 2610758
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    |||||||||| ||||| ||||||| |||||| |||||||||||||||    
T  2610804 atttcttaatatgtgtataaaaactttaaacgacattcattttaaaa 2610758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 8894984 - 8894926
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||| | |||||| ||||||| ||| ||||||||||||||||| ||||    
T  8894984 catttcttaatatgtatataaaaatcttaaacgacactcattttaaaacggatgaagta 8894926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 48920411 - 48920453
Alignment:
Q  75 cttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  48920411 cttaatatgtgtgtaaaaatcttaaacgacattcattttaaaa 48920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 5225797 - 5225740
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||| |||| ||||||||||||||| | ||| ||||| |||||||| |||||    
T  5225797 atttcttaatatgtgcgtaaaaaccttaaacgatattaattttgaaacggatagagta 5225740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 44707605 - 44707697
Alignment:
Q  7 attataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaa 100  Q
    ||||||| |||| ||||||  |||| |||||||||||||| ||||| | ||||| ||| || |||||| || ||||||||||| ||| ||||||    
T  44707605 attatacaaatagtaaatagagttaatttagtaaaattgtgatgtc-tatgacagcataattacatttttttatttgtgtgtagaaatcttaaa 44707697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 46298874 - 46298793
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||||| |||| |||||||||||||||||| |||||||||    ||| |||||||||||    ||| ||||||||||||||    
T  46298874 taaataatgttaatttagtaaaattgtcatgacttttgacatatatattacatttcttaaccattgtttaaaaaccttaaac 46298793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 8565935 - 8565982
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| ||||    
T  8565935 catttcttaatatgtgtgtaaaaacctt-aacgacattcattttgaaac 8565982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 9092768 - 9092820
Alignment:
Q  76 ttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||| |||||||||||||||||| | || ||||||| |||| ||||||||||    
T  9092768 ttaatatgtgtgtaaaaaccttaagcgactttcatttaaaaatggatggagta 9092820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 44938551 - 44938503
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||||||||| |||||||||||| ||||||| || |||||||| ||||    
T  44938551 catttcttaatatgtgtgtaaaaatcttaaacgacgttcattttgaaac 44938503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 50249482 - 50249530
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||||||||| |||||||||| |||| |||||||| ||||||| ||||    
T  50249482 catttcttaatatgtgtgtaaagacctaaaacaacactcattttgaaac 50249530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 44057657 - 44057532
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaaca 102  Q
    |||||||| ||||||| ||||| ||||   |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  44057657 aaacattacaccaatagtaaatgaggtacatttagtaaaattgtcatgtcatttgacatcattattacatttcttaatttgtgtgtaaaaatcttaaaca 44057558  T
Q  103 acattcattttaaaacggatggagta 128  Q
    ||| ||||||| ||||||| ||||||    
T  44057557 acactcattttgaaacggagggagta 44057532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 32097230 - 32097135
Alignment:
Q  6 cattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||||||||||||||||||| |||||||||||||||||||||| || ||| |||  ||||| | |||||||||||||||| ||||| | ||||||    
T  32097230 cattataccaataataaataaagttagtttagtaaaattgtcatatcatttaacattattattagatttcttaatttgtgtttaaaagctttaaac 32097135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 34782560 - 34782456
Alignment:
Q  22 aataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||||||||||||| ||||||||||||| ||| | | ||  |||||||| ||||||||| ||||||||||||| |  |||||||| ||| |||    
T  34782560 aataaggttagtttagtaaaaatgtcatgtcttttaacaacttcattccatttctttatttgtgtgcaaaaaccttaaacgatgttcattttgaaatgga 34782461  T
Q  122 tggag 126  Q
     ||||    
T  34782460 aggag 34782456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 25055961 - 25056020
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  25055961 acattttttaatatatgtgtaaaaactttaaacaacattcattttaaaacggatggagta 25056020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 35850477 - 35850382
Alignment:
Q  6 cattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcaca-tttcttaatttgtgtgtaaaaaccttaaa 100  Q
    ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||| |  ||| | | ||| |||||||||| ||||||||||||||    
T  35850477 cattacaccaatagtaaataaggctagtttagtaaaattctcatgtcttttgacatcgctattatatttttttaatttgtgggtaaaaaccttaaa 35850382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 4268914 - 4268964
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgg 120  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  4268914 catttcttaatatgtgtgtaaaaaccttaaacgacattcattttaaaacgg 4268964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 42286080 - 42286138
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||    
T  42286080 catttcttaatatgtttgtaaaaaccttaaacgacattcattttaaaacggagggagta 42286138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 4088602 - 4088538
Alignment:
Q  53 ttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||| || | |||||||||||    
T  4088602 ttttgacatcattattacatttcttaatttgtgtgtaaaaactttaaataaaactcattttaaaa 4088538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 39136128 - 39136000
Alignment:
Q  6 cattataccaataataaataaggttagtttagtaaaattgtcatgtctttt-----gacaccattatcacatttcttaatttgtgtgtaaaaaccttaaa 100  Q
    ||||| ||||||  ||||||||| || ||||||||||||||||||| ||||     ||||  ||||| |||||||||||||| |||||||||| ||||||    
T  39136128 cattacaccaatggtaaataaggctaatttagtaaaattgtcatgtttttttttttgacattattattacatttcttaatttatgtgtaaaaatcttaaa 39136029  T
Q  101 caaca-ttcattttaaaacggatggagta 128  Q
    | | | |||||||| ||||||| ||||||    
T  39136028 cgatatttcattttgaaacggaaggagta 39136000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 5078924 - 5078854
Alignment:
Q  20 taaataaggttagttt-agtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaa 90  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  5078924 taaataaggtttgttttagttaaattgtcatgtcttttgacaccatt-ttacatttcttaatttatgtgtaa 5078854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 10476322 - 10476373
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||| ||||| |||||||||||||||||||||||||  |||||||||||||    
T  10476322 catttattaatatgtgtgtaaaaaccttaaacaacatctattttaaaacgga 10476373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 28289398 - 28289445
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  28289398 atttattaatatgtgtgtaaaaaccttaaacgacattcattttaaaac 28289445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 30312717 - 30312775
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||| ||||| | |||||||||||||||||| ||||||||||||| ||||| ||||||    
T  30312717 cattttttaatatatgtgtaaaaaccttaaacgacattcattttaatacggagggagta 30312775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 37490969 - 37491027
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||  |||| ||||||||    
T  37490969 catttcttaatatgtgtgtaaaaaccttaaacgacatttattttgtaacgaatggagta 37491027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 47461343 - 47461286
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||| ||||||||||||  |||||| || |||||||| ||||||||||||||    
T  47461343 atttcttaatatgtgtgtaaaaattttaaacgacgttcattttgaaacggatggagta 47461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 26963618 - 26963722
Alignment:
Q  24 taaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatg 123  Q
    |||||||| |||||||||||||| ||| | ||||||    ||||  ||||||||||||||||||||||    | || ||||| ||||||| |||||||||    
T  26963618 taaggttattttagtaaaattgttatgacatttgactattttattccatttcttaatttgtgtgtaaatggttaaagcaacactcattttgaaacggatg 26963717  T
Q  124 gagta 128  Q
    |||||    
T  26963718 gagta 26963722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 48843737 - 48843797
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtact 130  Q
    ||||||||||| ||| |||||||||||||||| ||| ||||||||||| | | ||||||||    
T  48843737 catttcttaatatgtatgtaaaaaccttaaacgacactcattttaaaatgaagggagtact 48843797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 2406611 - 2406494
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccat--tatcacatttcttaatttgtgtgtaaaaaccttaaacaacattca 109  Q
    ||||||| ||||||||||| |||| |||||| | | || | |||| ||| |||  ||| ||| || |||||||||||| ||||| ||||||||||| | |    
T  2406611 accaatagtaaataaggttggttttgtaaaagtataatatattttaacaacatattattacactttttaatttgtgtg-aaaaatcttaaacaacactta 2406513  T
Q  110 ttttaaaacggatggagta 128  Q
    |||||||| ||||||||||    
T  2406512 ttttaaaaaggatggagta 2406494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 12977665 - 12977606
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||| ||||| |||||||||    
T  12977665 catttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaacgaatggagtac 12977606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 35778696 - 35778747
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||  | |||||||||||||||||||||||| ||||| |||||||    
T  35778696 catttcttaacatatgtgtaaaaaccttaaacaacatttattttgaaacgga 35778747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 6563386 - 6563332
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatgga 125  Q
    |||||||||| | || |||||||  |||||| |||||||||||||||||||||||    
T  6563386 atttcttaatatatgcgtaaaaaatttaaacgacattcattttaaaacggatgga 6563332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 18270750 - 18270808
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||| ||||||||| ||||    
T  18270750 catttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaacggatgaagta 18270808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 34274967 - 34275025
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    |||||||||| || ||||||| |||| |||| ||||| ||||||||||||| |||||||    
T  34274967 atttcttaatatgcgtgtaaacacctaaaacgacatttattttaaaacggagggagtac 34275025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 29635896 - 29635860
Alignment:
Q  82 tgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  29635896 tgtgtgtaaaaaccttaaacgacattcattttgaaac 29635860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 40348693 - 40348729
Alignment:
Q  82 tgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  40348693 tgtgtgtaaaaaccttgaacgacattcattttaaaac 40348729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 1019123 - 1019037
Alignment:
Q  27 ggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||    
T  1019123 ggttagtttagtaaaattgtcatgtcttttgacaccattattacatttctaaatttgtgtgtaaaaaccttaaacgacactcatttt 1019037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 11458271 - 11458375
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    ||||||| ||||||||||||||||||| |||| |||||||| |||||| | |||| |||| ||||| |||||||  |||||| |||||||||||||||||    
T  11458271 taaataaagttagtttagtaaaattgttatgttttttgacatcattattatattttttaacttgtgcgtaaaaaaattaaacgacattcattttaaaacg 11458370  T
Q  120 gatgg 124  Q
    |||||    
T  11458371 gatgg 11458375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 39009534 - 39009610
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgt 88  Q
    ||||| |||| |||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||||    
T  39009534 accaaaaatagataaggttagtttagtaaaattgtgatgtcctttgacatcattattacatttcttaatttgtgtgt 39009610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 44061176 - 44061239
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtactaaa 133  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  44061176 catttcttaatacgtgtataaaaaccttaaacgacattcattttaaaacggatggagtaataaa 44061239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 11528435 - 11528331
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    ||||||| | || |||||||||||||| |||| |||||| | |||||| | |||| |||| ||||| |||||||  |||||| ||| |||||||||||||    
T  11528435 taaataaagctaatttagtaaaattgttatgttttttgatatcattattatattttttaacttgtgcgtaaaaaatttaaacgacactcattttaaaacg 11528336  T
Q  120 gatgg 124  Q
    |||||    
T  11528335 gatgg 11528331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 19451179 - 19451128
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  19451179 catttcttaatatgtgtgtaaaaactttaaacaacattcattttgaaacgga 19451128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 12241422 - 12241344
Alignment:
Q  33 tttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatt 111  Q
    |||| ||||| |||||||||| | |||| |||||| |||||||||||| ||||||||| |||||||||| | |||||||    
T  12241422 tttaataaaagtgtcatgtctatagacaacattattacatttcttaatatgtgtgtaacaaccttaaacgatattcatt 12241344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 34413521 - 34413463
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||||||||| ||||||| |||||| || |||||||||||||||| ||||||    
T  34413521 catttcttaatttgtgtataaaaacattaaacgacgttcattttaaaacggagggagta 34413463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 50203254 - 50203299
Alignment:
Q  68 cacatttcttaatttgtgtgtaaaaaccttaaacaacattcatttt 113  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||    
T  50203254 cacatttcttaatatgtgcgtaaaaaccttaaacaacattcatttt 50203299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 41496386 - 41496445
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||| ||||| |||||||||||||||||||| | ||||||||||||| ||| ||||||    
T  41496386 acattttttaatatgtgtgtaaaaaccttaaacgatattcattttaaaatggaaggagta 41496445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 45839819 - 45839875
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||||||||  ||||||| |||||| ||||||||||||||||| ||||||||    
T  45839819 catttcttaatttgtg--taaaaactttaaacgacattcattttaaaacgaatggagta 45839875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 7905981 - 7905923
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||||||||||| ||||||    
T  7905981 catttcttaatatgtgtgtaaacacctaaaacgacactcattttaaaacggagggagta 7905923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 37624728 - 37624786
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| || ||||||| |||| |||| ||| ||||||||||||||||||||||    
T  37624728 catttcttaatatgagtgtaaacacctaaaacgacactcattttaaaacggatggagta 37624786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 39009651 - 39009693
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcatttt 113  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  39009651 atttcttaatttgtgtgtaaaaaccttaaacaacgctcatttt 39009693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 47817921 - 47817979
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||| ||||||| ||||||    
T  47817921 catttcttaatatgtgtataaaaaacttaaacgacattcattttgaaacggagggagta 47817979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 50317600 - 50317494
Alignment:
Q  22 aataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||||||||||||| || |||||||||||||| | |  |   |||| |||| |||||| ||||||||||| |||||| || |||| |||| ||    
T  50317600 aataaggttagtttagtaaaagtgccatgtcttttgacaacttccttggattttttaagttgtgtataaaaaccttagacaacactcgttttgaaactga 50317501  T
Q  122 tggagta 128  Q
     ||||||    
T  50317500 gggagta 50317494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 10573122 - 10573069
Alignment:
Q  76 ttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    ||||| |||||||||||| ||||||| |||||||||||||| |||||| |||||    
T  10573122 ttaatatgtgtgtaaaaatcttaaacgacattcattttaaagcggatgaagtac 10573069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 6991237 - 6991179
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||| |||||||||| ||| | ||||||||||||||| || |||||    
T  6991237 catttcttaatatgtgtataaaaaccttgaacgaaattcattttaaaacgaatagagta 6991179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 22220344 - 22220286
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||| ||||||||| ||||    
T  22220344 catttcttaatatgtgtgtaaagacctaaaacgacactcattttgaaacggatgaagta 22220286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 24157310 - 24157352
Alignment:
Q  76 ttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||    
T  24157310 ttaatatgtgtgtaaaaactttaaacgacattcattttaaaac 24157352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 38510230 - 38510172
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||| ||||| |||||||||| | || |||| ||| ||||||||||||||||||||||    
T  38510230 cattttttaatatgtgtgtaaagatctaaaacgacactcattttaaaacggatggagta 38510172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 32336790 - 32336678
Alignment:
Q  15 aataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatttta 114  Q
    ||||||||||||| ||||||||||||||||||||| |||||| ||||||| || |||||||||||| ||||| ||||||||||||||| |  ||||||||    
T  32336790 aataataaataagattagtttagtaaaattgtcatttcttttaacaccatcattacatttcttaatatgtgtataaaaaccttaaacatc-ctcatttta 32336692  T
Q  115 aaacggatggagta 128  Q
    ||||| ||||||||    
T  32336691 aaacgaatggagta 32336678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 41178288 - 41178169
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatt 111  Q
    ||||||| |||||| |  |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||  ||||    
T  41178288 accaatagtaaatatgactagtttagtaaaattgtcatttcttttgacatcattattacatttcttaatttgtgtgtaaaaaccttaaacgacacccatt 41178189  T
Q  112 ttaaaacggatggagtacta 131  Q
    || | ||| | |||||||||    
T  41178188 ttgagacgaagggagtacta 41178169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 45192061 - 45191958
Alignment:
Q  14 caataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatttt 113  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||| |||||| | |||||||||||||||| |||||| |||| |||||| |||||||    
T  45192061 caatagtaaataagattagtttcgtaaaattgtcatgtcttttgacatcattattatatttcttaatttgtgtataaaaatcttatacaacactcatttt 45191962  T
Q  114 aaaa 117  Q
    ||||    
T  45191961 aaaa 45191958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 2355249 - 2355165
Alignment:
Q  14 caataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaacctta 98  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |  |||||||||    
T  2355249 caatagtaaataaggctagtttagtaaaattgtcatgtcttttgacacaattattatatttcttaatttgtgcgcgaaaacctta 2355165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 26432248 - 26432335
Alignment:
Q  32 gtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    |||| |||| ||||||||||||||| ||| |||||| |||||||||||||| ||  |||||| |||||||||||||||||||||||||    
T  26432248 gttttgtaacattgtcatgtcttttaacatcattattacatttcttaatttatggataaaaatcttaaacaacattcattttaaaacg 26432335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 37109435 - 37109322
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaaca 102  Q
    |||||||| || |||| ||||||||| ||||||||| |||||| ||||||||||||| |  |||| |||||||||||||||||||  | ||| | |||||    
T  37109435 aaacattacactaatagtaaataaggctagtttagtgaaattgccatgtcttttgaccctgttattacatttcttaatttgtgtg--acaacttcaaaca 37109338  T
Q  103 acattcattttaaaac 118  Q
    ||| ||||||||||||    
T  37109337 acactcattttaaaac 37109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 2271375 - 2271475
Alignment:
Q  13 ccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattt 112  Q
    |||||| ||| ||||| |||||||||||||||||||||| |||||||| |||||| |||||| ||||||| ||| ||| ||  |||||| ||| ||||||    
T  2271375 ccaatagtaattaaggctagtttagtaaaattgtcatgttttttgacatcattattacatttattaatttatgtataagaattttaaacgacactcattt 2271474  T
Q  113 t 113  Q
    |    
T  2271475 t 2271475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 5295378 - 5295327
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgg 120  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  5295378 acatttcttaatatgtgtgtaaaaactttaaacaacattcattttaaaacgg 5295327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 13367922 - 13367863
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||||| |||||||||||||||||||||| ||| ||||| ||||||| ||||||    
T  13367922 acatttcttaatatgtgtgtaaaaaccttaaacaatatttattttgaaacggagggagta 13367863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 38075376 - 38075305
Alignment:
Q  29 ttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaa 100  Q
    |||||||||||||||| |||||| |||||||| |||| | |||||| ||||||||| ||||||||| |||||    
T  38075376 ttagtttagtaaaattatcatgtattttgacatcatttttacattttttaatttgtatgtaaaaactttaaa 38075305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 12339894 - 12339952
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| ||| ||||||    
T  12339894 catttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaatggacggagta 12339952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 24245187 - 24245129
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    |||||||||| |||||||||||| ||||||| ||||||||||| ||||||| |||||||    
T  24245187 atttcttaatatgtgtgtaaaaatcttaaacgacattcattttgaaacggagggagtac 24245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 7421484 - 7421412
Alignment:
Q  29 ttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||||||||||||||||||| | |||| ||| |||||| | |||||||||||||| | |||||| |||||||    
T  7421484 ttagtttagtaaaattgtcatattttttaacatcattattatatttcttaatttgtatataaaaatcttaaac 7421412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 32414883 - 32414951
Alignment:
Q  33 tttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||| |||| |||||||||| | |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  32414883 tttaggaaaagtgtcatgtctatagacaacattattacatttcttaatatgtgtgtaacaaccttaaac 32414951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 53582 - 53652
Alignment:
Q  50 gtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| |||||| || ||||||||||| |||||||||| |||||||||| ||||| ||| ||||||    
T  53582 gtcttttgacatcattattac-tttcttaatttatgtgtaaaaatcttaaacaacgttcatattataacgga 53652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 515083 - 515142
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||||| ||||| |||||||||||||  ||||||||||| ||||||| ||||||    
T  515083 acatttcttaatatgtgtataaaaaccttaaatgacattcattttgaaacggagggagta 515142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 396195 - 396137
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||| ||||||||||||||    
T  396195 catttcttaatatgtgtgtaaagacctaaaacgacactcattttgaaacggatggagta 396137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 27304145 - 27304222
Alignment:
Q  39 aaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    |||||||| ||||||||||||   |||||   |||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  27304145 aaaattgttatgtcttttgacgatattattgtatttattaatttatgtgtaaaaac-ttaaacaacattcattttaaaa 27304222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 9420102 - 9419986
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatt 111  Q
    ||||||| | || |||| || |||||||||| |||||||| | | |||| || |||  ||||||||||| |||||| || ||| |||||| ||| |||||    
T  9420102 accaatagttaacaaggctattttagtaaaagtgtcatgtttatagacaacactattgcatttcttaatatgtgtggaacaactttaaacgacactcatt 9420003  T
Q  112 ttaaaacggatggagta 128  Q
    || ||||||| ||||||    
T  9420002 ttgaaacggagggagta 9419986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 6115975 - 6115924
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||| ||||| |||||||||||||||||||| ||| ||||||| |||||||    
T  6115975 cattttttaatatgtgtgtaaaaaccttaaacgacactcattttgaaacgga 6115924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 18673120 - 18673049
Alignment:
Q  19 ataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaa 90  Q
    |||| |||||||| |||||||||||||| ||| | ||||||  | ||||  |||||||||||||||||||||    
T  18673120 ataagtaaggttattttagtaaaattgttatgacatttgactactttatttcatttcttaatttgtgtgtaa 18673049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 22699518 - 22699641
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttg-----acaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacat 106  Q
    ||||| ||| || ||||||| |||||||||| |||||||||| | |     ||| ||||||  ||||||||||| |||||| || |||||||||| |||     
T  22699518 accaacaattaacaaggttattttagtaaaagtgtcatgtctatagtatatacaacattattgcatttcttaatatgtgtggaacaaccttaaacgacac 22699617  T
Q  107 tcattttaaaacggatggagtact 130  Q
    ||||||| ||||||| ||| ||||    
T  22699618 tcattttgaaacggagggattact 22699641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 35233712 - 35233782
Alignment:
Q  71 atttcttaatttgtgtgtaaaa-accttaaacaacattcattttaaaacggatggagtactaaattgtcatt 141  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||| ||| ||| |||||| |||||| |||||    
T  35233712 atttcttaatgtgtgtgtaaaaaaccttaaacaatattcattttgaaatggagggagta-taaattatcatt 35233782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 34796652 - 34796595
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||  |||||||||||||| ||||||| ||||||||| ||||||| ||||||    
T  34796652 catttcttaacatgtgtgtaaaaacc-taaacaatattcattttgaaacggacggagta 34796595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 31233914 - 31233857
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||| |||||||||||| ||||| | ||||||||||| |||| || ||||||    
T  31233914 atttcttaatatgtgtgtaaaaatcttaagcgacattcattttgaaacagagggagta 31233857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 9812355 - 9812403
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||||||||| ||||| ||||||||||||||  |||||||||| ||||    
T  9812355 catttcttaatatgtgtataaaaaccttaaacggcattcattttgaaac 9812403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 39691134 - 39691257
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaaca 102  Q
    |||||||| ||||||| ||||||||  ||||||| |||||||| | |||||||||| | |||||| |||||||||||||| ||| ||||||| |||||||    
T  39691134 aaacattacaccaatagtaaataagactagtttaataaaattgccgtgtcttttgatatcattattacatttcttaatttatgtataaaaactttaaaca 39691233  T
Q  103 acattcattttaaaacggatggag 126  Q
    ||  ||||||||||||||||||||    
T  39691234 acgctcattttaaaacggatggag 39691257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 10437452 - 10437347
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatt 111  Q
    ||||||| ||||||| |||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||| | ||||| | |||||  ||| |||||    
T  10437452 accaatagtaaataatgttagtgtagtaaaactgtcatgtcttttgacatcattattacatttcttaatttgtatataaaacctttaaaagacactcatt 10437353  T
Q  112 ttaaaa 117  Q
    ||||||    
T  10437352 ttaaaa 10437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 11970357 - 11970431
Alignment:
Q  51 tcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatgga 125  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||    
T  11970357 tcttttgacatcattattacatttcttaatttgtgtgtaaaaatcttaaatgacactcattttaaaacggatgga 11970431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 1309329 - 1309271
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||    
T  1309329 catttcttaatatgtgtgtaaaaaccttaaatgacattcattttgaaacggatggagta 1309271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 21634293 - 21634351
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  21634293 catttcttaatatgtgtgtaaaaactttaaacgacattcattttaaaacagatggagta 21634351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 21642540 - 21642598
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  21642540 catttcttaatatgtgtgtaaaaactttaaacgacattcattttaaaacagatggagta 21642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 11977770 - 11977828
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||| ||||||| ||| ||||||| ||||||||||||||    
T  11977770 catttcttaatatgtgtgtaaaaagcttaaacgacactcattttgaaacggatggagta 11977828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 34534541 - 34534599
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  34534541 cattttttaatatgtgtgtaaaaacctcaaacaacattcattttgaaacggatgaagta 34534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 13974456 - 13974505
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  13974456 catttcttaatatgtgtgtaaaaatcttaaacgacattcattttaaaacg 13974505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 32535216 - 32535175
Alignment:
Q  76 ttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  32535216 ttaatttgtgtgtaaaaaccttaaacaacatttattttaaaa 32535175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 4911079 - 4911023
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagt 127  Q
    |||||||||| |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  4911079 atttcttaatatgtgtgtaaaaaccttaaatgacattcattttgaaacagatggagt 4911023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 34381770 - 34381713
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||| |||||||||||||||||||| ||||| ||||| ||||| | ||||||    
T  34381770 atttcttaatatgtgtgtaaaaaccttaaactacatttattttgaaacgaacggagta 34381713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 7721270 - 7721318
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||| ||||| ||||| |||||||||||||| ||||||||||||||||    
T  7721270 catttattaatatgtgtataaaaaccttaaacgacattcattttaaaac 7721318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 38370054 - 38370102
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||| ||||| | |||||||||||||||||||||| ||||||||||||    
T  38370054 catttattaatatatgtgtaaaaaccttaaacaacaatcattttaaaac 38370102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 43584356 - 43584292
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtactaaatt 135  Q
    |||||||||| |||||||||| |||| |||| ||| | | |||||||||||||||||| ||||||    
T  43584356 atttcttaatatgtgtgtaaacacctaaaacgacacttactttaaaacggatggagtattaaatt 43584292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 24424885 - 24424932
Alignment:
Q  80 tttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagt 127  Q
    |||||||||||||||||||||| ||| || ||||||||| ||||||||    
T  24424885 tttgtgtgtaaaaaccttaaacgacactcgttttaaaactgatggagt 24424932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 7736563 - 7736617
Alignment:
Q  76 ttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtact 130  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||| ||| ||||||||    
T  7736563 ttaatatgtgtgtaaaaatcttaaacgacattcattttgaaatggagggagtact 7736617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 10344913 - 10344855
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||| ||||||| ||||||    
T  10344913 catttcttaatatgtgtgtaaagacctaaaacgacactcattttgaaacggagggagta 10344855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 9065613 - 9065576
Alignment:
Q  91 aaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9065613 aaaccttaaacaacattcattttgaaacggatgtagta 9065576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 38362096 - 38362059
Alignment:
Q  84 tgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  38362096 tgtgtaaaaaccttaaataacattcgttttaaaacgga 38362059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 14161871 - 14161819
Alignment:
Q  70 catttcttaatttgtgtgtaaaaa-ccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| |||||| ||||| |||||||| ||||||||||| |||||||    
T  14161871 catttcttaatatgtgtgcaaaaaaccttaaacgacattcattttgaaacgga 14161819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 27652335 - 27652231
Alignment:
Q  24 taaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatg 123  Q
    |||||||| |||||||||||||| ||| | ||||||    ||||  ||||||||||| |||||||||   ||| || | ||| |||||||||||||||||    
T  27652335 taaggttattttagtaaaattgttatgacatttgactattttattccatttcttaatctgtgtgtaattgcctaaagcgacactcattttaaaacggatg 27652236  T
Q  124 gagta 128  Q
     ||||    
T  27652235 aagta 27652231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 39803671 - 39803615
Alignment:
Q  57 gacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatttt 113  Q
    |||| |||||| | |||||||||| ||||||||| ||| |||||||||||| |||||    
T  39803671 gacaacattattaaatttcttaatatgtgtgtaacaactttaaacaacatttatttt 39803615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 46160784 - 46160906
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaaca 102  Q
    ||||||||  |||||| || |||||||||||||||||||||| |||||| ||||  |||||| || ||||||||||||||||||||||||||||||||      
T  46160784 aaacattacgccaatagtagataaggttagtttagtaaaattttcatgttttttt-caccatcattacatttcttaatttgtgtgtaaaaaccttaaagg 46160882  T
Q  103 acattcattttaaaacggatggag 126  Q
    ||||||||||| ||||||| ||||    
T  46160883 acattcattttgaaacggagggag 46160906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 54918219 - 54918312
Alignment:
Q  25 aaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    |||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||| | | ||||||| ||||    
T  54918219 aaggctagtttagtaaaattgtcatgtcttttgacatcattattaaatttcttaatttatgtgtaaaaaccttaaacgatactcattttgaaac 54918312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 19897412 - 19897528
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatt 111  Q
    ||||||| | ||| ||| || |||||||||| |||||||||| | |||||||||||   |||||||||| ||||||||| |||||||||||||| |||||    
T  19897412 accaatagttaattaggctattttagtaaaagtgtcatgtctctagacaccattattgtatttcttaatatgtgtgtaacaaccttaaacaacactcatt 19897511  T
Q  112 ttaaaacggatggagta 128  Q
    ||||||| || ||||||    
T  19897512 ttaaaacagagggagta 19897528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 28854450 - 28854557
Alignment:
Q  7 attataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcac-atttcttaatttgtgtgtaaaaaccttaaacaaca 105  Q
    |||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||||| || |||| ||||| | ||||||| |||||||||| |||    
T  28854450 attacaccaataattaataaggttagtttagtaaaattgtcttgccttttgacgccattattacaattttttaatatttgtgtaacaaccttaaacgaca 28854549  T
Q  106 ttcatttt 113  Q
     |||||||    
T  28854550 ctcatttt 28854557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 26187334 - 26187246
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaa 93  Q
    |||||||  ||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||| |||||| ||||||||||||||||||    
T  26187334 aaacattgcaccaatagtaaataagattagtttagtataattgtcatgt-ttttgacatcattattacattt-ttaatttgtgtgtaaaaa 26187246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 36844710 - 36844651
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |||||||    
T  36844710 catttcttaatatgtgtctaaaaaccttaaacgacattcattttgaaacggagggagtac 36844651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 26243925 - 26243827
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    |||||||| | ||||| |||||||  |||||||| |||||||||||||| |||| |||  ||| | |||||||||||| | ||| ||||||||||||||    
T  26243925 aaacattacatcaatagtaaataaaattagtttaataaaattgtcatgttttttaacatgattgttacatttcttaatgtatgtctaaaaaccttaaac 26243827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 31190657 - 31190707
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    |||||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  31190657 acatttcttaatatgtatgtaaaaaccttaaacgacattcattttaaaacg 31190707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 7230862 - 7230815
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaa 117  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  7230862 catttcttaatatgtgtgtaaaaatcttaaacgacattcattttaaaa 7230815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 21205537 - 21205641
Alignment:
Q  22 aataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||||||  |||||| |||||||||| || ||| ||| ||  ||||||||||  | |||||||||| ||||||| ||| ||||||||||||| |    
T  21205537 aataaggttagttgggtaaaagtgtcatgtctatttacaacatcattgcatttcttaa--tatgtgtaaaaatcttaaacgacactcattttaaaacgaa 21205634  T
Q  122 tggagta 128  Q
     ||||||    
T  21205635 cggagta 21205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 27067783 - 27067839
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||||  ||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  27067783 catttcttaat--gtgtgtaaaaaccttaaacgacactcattttaaaacggaaggagta 27067839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 47823387 - 47823336
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgg 120  Q
    |||||| ||||| ||||| ||||||||||||||||| |||||||||||||||    
T  47823387 acattttttaatatgtgtataaaaaccttaaacaacgttcattttaaaacgg 47823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 11337590 - 11337532
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||| |||| |||||||||||||||||||| ||||||||||| ||| ||| ||||||    
T  11337590 catttcataatatgtgtgtaaaaaccttaaacgacattcattttgaaatggaaggagta 11337532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 30315492 - 30315550
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||||||| | |||||||| ||||||||||| ||||||| ||||||    
T  30315492 catttcttaatatgtgtgtaacagccttaaacgacattcattttgaaacggagggagta 30315550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 50646110 - 50646052
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagt 127  Q
    |||||| ||||| |||||||||||| ||||||| ||| ||||||||||||||| |||||    
T  50646110 acattttttaatatgtgtgtaaaaatcttaaacgacactcattttaaaacggaaggagt 50646052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 2508802 - 2508886
Alignment:
Q  33 tttagtaaaattgtcatgt--cttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaa 115  Q
    |||||||||||||| ||||  ||||||||||  ||||   |||||||||||||||||||||| ||||||||  || |||||||||    
T  2508802 tttagtaaaattgtaatgtatcttttgacacttttatttaatttcttaatttgtgtgtaaaatccttaaacttcactcattttaa 2508886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 6084797 - 6084736
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtacta 131  Q
    ||||| ||||||||||||| |||||||||||| ||| ||||| | ||||||| |||||||||    
T  6084797 cattttttaatttgtgtgttaaaaccttaaacgacactcattgtgaaacggaaggagtacta 6084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 790254 - 790314
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    |||||||||||| ||||||| ||| ||| |||||||| | ||||||||||||| |||||||    
T  790254 acatttcttaatatgtgtgtcaaagcctaaaacaacactaattttaaaacggagggagtac 790314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 2985429 - 2985529
Alignment:
Q  33 tttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtactaa 132  Q
    |||||||||| |||||| | ||| ||||  ||||| |||||||||||| ||||||||| |||||||| | | ||| ||||| ||| ||| |||||| |||    
T  2985429 tttagtaaaaatgtcatatatttggacaatattattacatttcttaatatgtgtgtaacaaccttaagcgatatttattttgaaatggagggagtattaa 2985528  T
Q  133 a 133  Q
    |    
T  2985529 a 2985529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 3986033 - 3986089
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||||  ||||||||||||||||||| ||||||||||| |||| || ||||||    
T  3986033 catttcttaat--gtgtgtaaaaaccttaaacgacattcattttgaaactgaaggagta 3986089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 10456646 - 10456591
Alignment:
Q  5 acattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgaca 60  Q
    |||||| || |||||||||||| ||||||||| | ||||||| |||||||||||||    
T  10456646 acattacactaataataaataacgttagtttaatgaaattgttatgtcttttgaca 10456591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 48901889 - 48901940
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| ||| |||||||| ||||||| ||| |||||||||||||||    
T  48901889 catttcttaatatgtatgtaaaaaacttaaacgacactcattttaaaacgga 48901940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 40717340 - 40717298
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattt 112  Q
    ||||||||||| |||||||||||||||||||| || |||||||    
T  40717340 catttcttaatatgtgtgtaaaaaccttaaacgacgttcattt 40717298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 42072168 - 42072218
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||| ||||||||||||| ||| || ||||||||||| |||||||    
T  42072168 atttcttaatatgtgtgtaaaaacattatacgacattcattttgaaacgga 42072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 22857238 - 22857303
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtactaaatt 135  Q
    ||||| ||||| ||||||||||||| |||||  ||||| ||||| |||||||| |||| |||||||    
T  22857238 cattttttaatatgtgtgtaaaaactttaaatgacatttattttgaaacggatagagtcctaaatt 22857303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 44064433 - 44064380
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatg 123  Q
    ||||||||||| ||||||||||||||| |||  ||| ||||||| |||||||||    
T  44064433 catttcttaatatgtgtgtaaaaacctaaaaagacactcattttgaaacggatg 44064380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 48169583 - 48169668
Alignment:
Q  33 tttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    |||||||||| |||||||||||| || | ||||||  ||||| ||||| | || |||| ||||||| || ||||||||||| ||||    
T  48169583 tttagtaaaagtgtcatgtctttggataacattattgcattttttaatatatgcgtaacaaccttagacgacattcattttgaaac 48169668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 8817322 - 8817378
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatgga 125  Q
    |||||||||||| | | |||||||||||||||  ||| | |||||||||||||||||    
T  8817322 acatttcttaatatatttgtaaaaaccttaaaagacacttattttaaaacggatgga 8817378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 26244616 - 26244528
Alignment:
Q  14 caataataaataaggttagtttagtaaaattgtcatg-tcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||| ||||||| ||||||||| ||||||||||||| | |||| |||  ||| | |||||||||||| | ||  ||||||||||||||    
T  26244616 caatagtaaataaagttagtttaataaaattgtcatgtttttttaacatgattgttacatttcttaatgtatggctaaaaaccttaaac 26244528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 44195001 - 44194898
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||| ||| ||| ||  | |||||||||||    
T  44195001 taaataaggttagtttagtaaaattgtcatatcatttgacatcattattacatttcttaatttgtgtgtaaaaatcttgaacgacgcttattttaaaacg 44194902  T
Q  120 gatg 123  Q
    ||||    
T  44194901 gatg 44194898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 6247818 - 6247940
Alignment:
Q  6 cattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaaca 105  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||  |||||||||| ||||||| | ||||||||||| |||    
T  6247818 cattacaccaatagtaaataaggctagtttagtaaaattgtcatgacttttgacatcattatttcatttcttaacttgtgtggacaaaccttaaacgaca 6247917  T
Q  106 ttcattttaaaacggatggagta 128  Q
     || ||||||||| || ||||||    
T  6247918 ctccttttaaaacagagggagta 6247940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 18248836 - 18248911
Alignment:
Q  17 taataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaa 92  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||    
T  18248836 taataaataaggttagtttagtaaaattgtcatgtcttttaacatcatcatcacattttttaatttgtgtgtaaaa 18248911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 15524335 - 15524456
Alignment:
Q  6 cattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgaca---ccattatcaca-tttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||     ||||| | | ||| ||||||||||||||||||  ||||||    
T  15524335 cattacaccaatagtaaataaggctaatttagtaaaattgtcatgtcttttgacatttttattattatagttttttaatttgtgtgtaaaaattttaaac 15524434  T
Q  102 aacattcattttaaaacggatg 123  Q
    |||||||||||||||| |||||    
T  15524435 aacattcattttaaaatggatg 15524456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 1198773 - 1198673
Alignment:
Q  17 taataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaa 116  Q
    ||||||||||  ||| ||||||||| |||| ||||||||  ||| |||||| | |||||||||||| |||||||||| ||||||||| ||||||||||||    
T  1198773 taataaataatattaatttagtaaagttgttatgtctttaaacatcattattatatttcttaatttatgtgtaaaaatcttaaacaatattcattttaaa 1198674  T
Q  117 a 117  Q
    |    
T  1198673 a 1198673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 1756966 - 1756848
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaaca 102  Q
    |||||| | |||||||||||||||| |||||||||||||||||||||||||||||| || |  || | |||| ||||| ||||| || |||| || |||     
T  1756966 aaacatcacaccaataataaataagattagtttagtaaaattgtcatgtcttttgatactaccattatattttttaatatgtgtatataaactttcaacg 1756867  T
Q  103 acattcattttaaaacgga 121  Q
    | ||| |||||||||||||    
T  1756866 atattaattttaaaacgga 1756848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 4603291 - 4603218
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaac 94  Q
    ||||||| ||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||| |||||||    
T  4603291 taaataaagttagtttagtaaaattgt-atgtcttttgacattattattacatttcttaatttgtgtataaaaac 4603218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 33056072 - 33056131
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||| ||||| |||||||||||  ||||||| ||||||||||||||||||||||||||    
T  33056072 acattttttaatatgtgtgtaaaattcttaaacgacattcattttaaaacggatggagta 33056131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 681783 - 681677
Alignment:
Q  24 taaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatg 123  Q
    ||||| |||||||||||||   | || ||||| |||| | ||||  ||||||||||| |||||| ||||||||||||| ||| ||||||| ||||||| |    
T  681783 taagggtagtttagtaaaaggattatatctttagacaactttattgcatttcttaatatgtgtgcaaaaaccttaaacgacactcattttgaaacggagg 681684  T
Q  124 gagtact 130  Q
    |||||||    
T  681683 gagtact 681677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 15083139 - 15083081
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||| ||||| | ||||||||||| ||||| |||||||||||||||||||||||||||    
T  15083139 catttattaatatatgtgtaaaaactttaaataacattcattttaaaacggatggagta 15083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 19164537 - 19164591
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatgga 125  Q
    |||||||||| | ||||||||||||||||||||||||| |||| |||||||||||    
T  19164537 atttcttaatatatgtgtaaaaaccttaaacaacattcgttttgaaacggatgga 19164591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 35799398 - 35799456
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||||||||||||||||||| ||||||    
T  35799398 catttcttaatatgtgtgtaaacacctaaaacgacattcattttaaaacggagggagta 35799456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 8540221 - 8540274
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatg 123  Q
    ||||||||||| |||||||||||| ||||||| | |||||||||||||||||||    
T  8540221 catttcttaatatgtgtgtaaaaatcttaaactatattcattttaaaacggatg 8540274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 12565441 - 12565392
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  12565441 catttattaatatgtgtgtaaaaaccttaaacgacattcattttaaaacg 12565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 7872748 - 7872700
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacg 119  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  7872748 attttttaatatgtgtgtaaaaaccataaacaacattcattttaaaacg 7872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 11188220 - 11188161
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    ||||| ||||| ||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  11188220 catttattaatatgtgtgtaagaaccttaaacgacattcattttgaaacggagggagtac 11188161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 43971958 - 43972016
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||||||||||||||| || ||||||||||| |||| || ||||||    
T  43971958 catttcttaatatgtgtgtaaaaaccttagacgacattcattttgaaacagagggagta 43972016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 45423790 - 45423848
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| ||||||||||||  |||||| ||||||||||||||| ||| ||||||    
T  45423790 catttcttaatatgtgtgtaaaaattttaaacgacattcattttaaaatggagggagta 45423848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 40608559 - 40608519
Alignment:
Q  88 taaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  40608559 taaaaatcttaaacaacattcattttacaacggatggagta 40608519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 30544343 - 30544418
Alignment:
Q  26 aggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    |||||||||||||||||||   |||| | |||||    |||| || ||||||||||||||||||||||||||||||    
T  30544343 aggttagtttagtaaaattagtatgtttgttgactaatttattacgtttcttaatttgtgtgtaaaaaccttaaac 30544418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 34456069 - 34456112
Alignment:
Q  84 tgtgtaaaaaccttaaacaacattcattttaaaacggatggagt 127  Q
    |||||||||| |||||||||  ||||||||||||||||||||||    
T  34456069 tgtgtaaaaatcttaaacaaagttcattttaaaacggatggagt 34456112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 34456507 - 34456428
Alignment:
Q  3 aaacattataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaattt 82  Q
    |||| ||| |||||||||||||||    |||||| ||||||||| ||||  |||| ||||||||| ||||||||||||||    
T  34456507 aaactttacaccaataataaataaaaccagtttaataaaattgttatgttatttgccaccattattacatttcttaattt 34456428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 983666 - 983765
Alignment:
Q  27 ggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggag 126  Q
    |||||||||||||||| ||  |||| |||||||  | ||||  ||||||||||| | || |||| ||| |||| | ||| ||||||||||||||||||||    
T  983666 ggttagtttagtaaaaatg--atgtattttgactactttattgcatttcttaatctctgagtaataactttaagcgacactcattttaaaacggatggag 983763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 27986210 - 27986268
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||||||| ||||| ||||    
T  27986210 catttcttaatatgtgtgtaaagacctaaaacgacactcattttaaaatggatgaagta 27986268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 28072742 - 28072800
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||||||| ||||| ||||    
T  28072742 catttcttaatatgtgtgtaaagacctaaaacgacactcattttaaaatggatgaagta 28072800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 37038739 - 37038689
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||| |||||||||||| ||||||| ||| ||||||| |||||||    
T  37038739 atttcttaatatgtgtgtaaaaatcttaaacgacactcattttgaaacgga 37038689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 4051735 - 4051675
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtact 130  Q
    ||||||||| | |||||||||| |||| |||| ||| ||||||||||||||| ||| ||||    
T  4051735 catttcttactatgtgtgtaaacacctaaaacgacactcattttaaaacggaaggaatact 4051675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 36685712 - 36685656
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattca-ttttaaaacggatggag 126  Q
    |||| ||||| |||||||| ||||||||||| ||||||| |||||||||||| ||||    
T  36685712 atttattaatatgtgtgtataaaccttaaacgacattcatttttaaaacggagggag 36685656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 28052 - 27963
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| ||| |||||| |||||||    
T  28052 accaatagtaaataaggttagtttagtaaaattatcatgtcttttaacatcattattacatttcttaatttatgtataaaaatcttaaac 27963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 26405304 - 26405188
Alignment:
Q  12 accaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcatt 111  Q
    ||||||| | || |||| || |||||||||| |||||||||| | |||| ||||||  ||||| ||||| ||||||||| |||||||||| ||| |||||    
T  26405304 accaatagttaacaaggctattttagtaaaagtgtcatgtctatagacaacattattgcatttattaatatgtgtgtaacaaccttaaaccacactcatt 26405205  T
Q  112 ttaaaacggatggagta 128  Q
    || ||||||||||||||    
T  26405204 ttgaaacggatggagta 26405188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 24639750 - 24639862
Alignment:
Q  7 attataccaataataaataaggttagtttagtaaaattgtcatgtcttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacat 106  Q
    |||| ||||||||||||| || ||| |||||| ||||||||| ||| ||||||| |||||| | |||| ||||||||| |||||||||  ||||  |||     
T  24639750 attacaccaataataaatgagattaatttagtcaaattgtcaggtcctttgacatcattattatattttttaatttgtatgtaaaaacaataaaagacac 24639849  T
Q  107 tcattttaaaacg 119  Q
    | |||||||||||    
T  24639850 ttattttaaaacg 24639862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 12459288 - 12459238
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||| | |||||||||||||||||||||||||||||||| |||||||    
T  12459288 atttcttagtatgtgtgtaaaaaccttaaacaacattcatttttaaacgga 12459238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 21271373 - 21271315
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||| || ||||||    
T  21271373 catttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaacagagggagta 21271315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 32193990 - 32194042
Alignment:
Q  69 acatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||||| | |||||||||||||||||| ||||||||||| |||||||    
T  32193990 acatttcttaatatatgtgtaaaaaccttaaacgacattcattttgaaacgga 32194042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 3988715 - 3988657
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||| ||| |||||||||||| ||||||| |||||||||||||||| || ||||||    
T  3988715 catttctcaatatgtgtgtaaaaatcttaaacgacattcattttaaaacagagggagta 3988657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 32429459 - 32429517
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| |||| |||||||| ||||||| ||||||| ||||||    
T  32429459 catttcttaatatgtgtgtaaacacctaaaacaacactcattttgaaacggagggagta 32429517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 4850476 - 4850417
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagtac 129  Q
    ||||||||||| |||||||||| |||| |||| ||| ||||||| ||||| |||||||||    
T  4850476 catttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaacgaatggagtac 4850417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 8957964 - 8958003
Alignment:
Q  82 tgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  8957964 tgtgtgtaaaaaccttaaacgacattcattttagaacgga 8958003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 8961393 - 8961354
Alignment:
Q  82 tgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  8961393 tgtgtgtaaaaaccttaaacgacattcattttagaacgga 8961354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 13011318 - 13011260
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||||| ||||||| || |||||||| |||| || ||||||    
T  13011318 catttcttaatatgtgtgtaaaaatcttaaacgacgttcattttgaaacagagggagta 13011260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 17828465 - 17828507
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattt 112  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  17828465 catttcttaatttgtgtgtagaaaccttaaactacatttattt 17828507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 20226191 - 20226133
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| | |||| ||||||||||||| ||||||||||| ||| ||| ||||||    
T  20226191 catttcttaatatatgtggaaaaaccttaaacgacattcattttgaaagggaaggagta 20226133  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 22120175 - 22120117
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| | |||| ||||||||||||| ||||||||||| ||| ||| ||||||    
T  22120175 catttcttaatatatgtggaaaaaccttaaacgacattcattttgaaagggaaggagta 22120117  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 29400117 - 29400175
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||| |||||||||| | || ||||||||  |||||||||||||| ||||||    
T  29400117 catttcttaatatgtgtgtaaagatctaaaacaacacacattttaaaacggagggagta 29400175  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 34439378 - 34439320
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||||||| ||||| || |||| |||| ||| ||||||||||||||| ||||||    
T  34439378 catttcttaatttatgtgtcaacacctaaaacgacactcattttaaaacggaaggagta 34439320  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 29915726 - 29915783
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    |||||||||| ||||||  || |||| |||||||||||||||| ||||||| ||||||    
T  29915726 atttcttaatatgtgtgccaacacctaaaacaacattcattttgaaacggagggagta 29915783  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 31768016 - 31767987
Alignment:
Q  72 tttcttaatttgtgtgtaaaaaccttaaac 101  Q
    ||||||||||||||||||||||||||||||    
T  31768016 tttcttaatttgtgtgtaaaaaccttaaac 31767987  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 13503814 - 13503766
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaac 118  Q
    ||||||||||| |||||||||||| ||||||| ||||| ||||| ||||    
T  13503814 catttcttaatatgtgtgtaaaaatcttaaacgacatttattttgaaac 13503766  T

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Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 4324 - 4374
Alignment:
Q  71 atttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  4324 atttcttaatatgtgtgtaaaaaccttaaacaaaattcattttaaaacgga 4374  T

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Target: scaffold0246 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 15456 - 15553
Alignment:
Q  20 taaataaggttagtttagtaaaattgtcatgtc-ttttgacaccattatcacatttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaa 116  Q
    |||||||||||||| |  ||||||||||||||| |||| ||| |||||| ||||||||||| || | | |||||   |||||||||||||||||||||    
T  15456 taaataaggttagtctgataaaattgtcatgtcttttttacatcattattacatttcttaaattatatataaaatttttaaacaacattcattttaaa 15553  T

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Target: scaffold0300 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 4745 - 4796
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacgga 121  Q
    ||||||||||| ||||||||||||  |||||| ||||| |||||||||||||    
T  4745 catttcttaatatgtgtgtaaaaattttaaacgacatttattttaaaacgga 4796  T

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Target: scaffold0332 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 3791 - 3733
Alignment:
Q  70 catttcttaatttgtgtgtaaaaaccttaaacaacattcattttaaaacggatggagta 128  Q
    ||||||||| | |||||||||| |||| |||| ||| ||||||||||||||| ||||||    
T  3791 catttcttattatgtgtgtaaagacctaaaacgacactcattttaaaacggaaggagta 3733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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