View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13374_low_24 (Length: 206)
Name: NF13374_low_24
Description: NF13374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13374_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 13022908 - 13022736
Alignment:
| Q |
15 |
cacagacaccgtacgtgacactaacgtgtaagcacatgcaataatttaagaaatagaagtaattgaatgaagctaaatgtggcatggccgtgtcagcatc |
114 |
Q |
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| T |
13022908 |
cacagacaccgtacgtgacactaacgtgtaagcacatgcaataatttaagaaatagaagtaattgaatgaagctaaatgtggcatggtcgtgtcagcatc |
13022809 |
T |
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| Q |
115 |
agacagtgacttgtgttccaaggttcttaaagagttacttgttttgcaagctacctatgagctatggctgcca |
187 |
Q |
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| T |
13022808 |
agacagtgacttgtgttccaaggttcttaaagagttacttgttttgcaagctacctatgagctatggctgcca |
13022736 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 42654395 - 42654366
Alignment:
| Q |
54 |
aataatttaagaaatagaagtaattgaatg |
83 |
Q |
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| T |
42654395 |
aataatttaagaaatagaagtaattgaatg |
42654366 |
T |
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