View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_high_15 (Length: 365)
Name: NF13375_high_15
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 43224465 - 43224745
Alignment:
| Q |
69 |
tatcgaaaggggtttctttttatttggtacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaacagtagaattgtgaccatcaatg |
168 |
Q |
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| T |
43224465 |
tatcgaaaggggtttctttttatttggcacacaatgatttgggtgttttggaatgtgagaaatgataggattttcaactgtagaattgtgaccatcaatg |
43224564 |
T |
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| Q |
169 |
agaattttggggatatcaaggttatgtcatggaagtagagtttgtgtagattgaaatggtcaccttgtctcttttacgagtgatgttgggatcctggcga |
268 |
Q |
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| T |
43224565 |
aaatttttggggatatcaaggttatgtcatggaagtagagtttgtgtagattgaaatggtcaccttgtctcttttatgagtgatgttgggatcccggcga |
43224664 |
T |
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| Q |
269 |
ttgtaatagcttg-nnnnnnnnggctatggggagggggcagctggataatttctgtacaggctgtttttgtctcggctagt |
348 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43224665 |
ttgtaatagcttgtttttttttggctatggggagggggcagctggataatttctgtacaggctgtttttgtttcggctagt |
43224745 |
T |
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