View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_high_29 (Length: 272)

Name: NF13375_high_29
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_high_29
NF13375_high_29
[»] chr6 (1 HSPs)
chr6 (82-257)||(24998891-24999065)
[»] chr2 (1 HSPs)
chr2 (36-219)||(38979700-38979883)
[»] chr3 (2 HSPs)
chr3 (36-219)||(51423942-51424126)
chr3 (83-219)||(11685962-11686097)
[»] chr8 (2 HSPs)
chr8 (83-219)||(8211560-8211695)
chr8 (36-219)||(9289755-9289939)
[»] scaffold0442 (1 HSPs)
scaffold0442 (36-219)||(13036-13222)
[»] chr4 (3 HSPs)
chr4 (83-219)||(7055248-7055384)
chr4 (36-219)||(14463069-14463253)
chr4 (36-72)||(7055398-7055434)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 24998891 - 24999065
Alignment:
Q  82 cccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatata 181  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  24998891 cccttatatgcatttgaactccttaggaacaaattatattaccatcatgaatgtg-cttttttggttaatcctctatgtgcaacagttagagtatatata 24998989  T
Q  182 tgcaagttatgctttgaagagttcttatgttaattttannnnnnnaataatgacagtgttcttttatatccacagg 257  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  24998990 tgcaagttatgctttgaagagttcttatgttaattttatttttttaataatgacagtgttcttttatatccacagg 24999065  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 38979700 - 38979883
Alignment:
Q  36 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgt 135  Q
    ||||||||||||| ||||||||||||||||||||||| |        ||||||||||||||||| ||||   |||||||||| |||||||||| ||||||    
T  38979700 atatagtagaagtagcttcatagatgttgtattttatagtgttttttccttatatgcatttgaattcctcgagaatgaattacattaccatcacgaatgt 38979799  T
Q  136 ggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 219  Q
    |         |||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  38979800 gtttttttttgttaatcctctaggtgcgacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 38979883  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 51423942 - 51424126
Alignment:
Q  36 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 133  Q
    ||||||||||||| |||||||||||||| ||||||||  ||        ||||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  51423942 atatagtagaagtggcttcatagatgttttattttatagtgttttttttccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 51424041  T
Q  134 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 219  Q
    |||        ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  51424042 gtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 51424126  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 11685962 - 11686097
Alignment:
Q  83 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 182  Q
    ||||||||||||||||| ||||  | || |||||| ||||||||||||||||||        ||||||||||||| |||||| ||||||||||| |||||    
T  11685962 ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaagagttagagtatgtatat 11686060  T
Q  183 gcaagttatgctttgaagagttcttatgttaatttta 219  Q
    |||||||||||||||| || |||||||||||||||||    
T  11686061 gcaagttatgctttgatgatttcttatgttaatttta 11686097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 8211560 - 8211695
Alignment:
Q  83 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 182  Q
    ||||||||||||||||| ||||    || |||||| ||||||||||||||||||        ||||||||||||| |||||||||||||||||| ||| |    
T  8211560 ccttatatgcatttgaattcctcgacaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatct 8211658  T
Q  183 gcaagttatgctttgaagagttcttatgttaatttta 219  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8211659 gcaagttatgctttgatgagttcttatgttaatttta 8211695  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 9289755 - 9289939
Alignment:
Q  36 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 133  Q
    ||||||||||||| |||||||||||||| ||||||||  ||         |||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  9289755 atatagtagaagtggcttcatagatgttttattttatagtgattttttttcttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 9289854  T
Q  134 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 219  Q
     ||        ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||    
T  9289855 atg-tttttttggttaatcctctaggtgcaacagttagagtttgtatctgcaagttatgctttgatgagttcttatgttaatttta 9289939  T

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Target: scaffold0442 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 13222 - 13036
Alignment:
Q  36 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc----ccttatatgcatttgaactccttaggaatgaattatattaccatcatga 131  Q
    ||||||||||||| ||||||||||||||||||||||| |            ||||||||||||||||| ||||  | || |||||| |||||||||| ||    
T  13222 atatagtagaagtggcttcatagatgttgtattttatagtgttttttttttccttatatgcatttgaattcctcggaaacgaattacattaccatcacga 13123  T
Q  132 atgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 219  Q
    |||||        | |||||| |||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  13122 atgtgttatttttg-ttaatcatctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 13036  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 7055384 - 7055248
Alignment:
Q  83 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 182  Q
    ||||||||||||||||| ||||  |||| |||||| |||||||||| |||||||         |||||||||||| ||||| ||||||| |||| ||| |    
T  7055384 ccttatatgcatttgaattcctcgggaacgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtgcagcagttagcgtatgtatct 7055285  T
Q  183 gcaagttatgctttgaagagttcttatgttaatttta 219  Q
     ||||||||||||||| ||||||||||||||||||||    
T  7055284 tcaagttatgctttgatgagttcttatgttaatttta 7055248  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 14463253 - 14463069
Alignment:
Q  36 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc-ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatg 134  Q
    ||||||||||||| ||||||||||||||||||||||| |         |||||||| |||||||| ||||  |||| |||||| |||||||||| |||||    
T  14463253 atatagtagaagtggcttcatagatgttgtattttatagtgtttttttccttatattcatttgaattcctcgggaacgaattacattaccatcacgaatg 14463154  T
Q  135 tggnnnnnnng---gttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 219  Q
    ||            |||||||||||| ||||||||||||||   | ||| ||||||||||||||||| |||||||||||| |||||||    
T  14463153 tgttttttttttttgttaatcctctaggtgcaacagttaga---tgtatctgcaagttatgctttgatgagttcttatgtcaatttta 14463069  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 7055434 - 7055398
Alignment:
Q  36 atatagtagaagttgcttcatagatgttgtattttat 72  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7055434 atatagtagaactggcttcatagatgttgtattttat 7055398  T

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