View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_high_3 (Length: 699)
Name: NF13375_high_3
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 664; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 14 - 677
Target Start/End: Original strand, 6967712 - 6968375
Alignment:
| Q |
14 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
113 |
Q |
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| T |
6967712 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
6967811 |
T |
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| Q |
114 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
213 |
Q |
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| T |
6967812 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
6967911 |
T |
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| Q |
214 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
313 |
Q |
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| T |
6967912 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
6968011 |
T |
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| Q |
314 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaa |
413 |
Q |
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| T |
6968012 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaa |
6968111 |
T |
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| Q |
414 |
caaggtaaagaaattggtctaagtaagaggcagagaaagctttacacaaattgcacaggtaatggtgaatatgaaaggggaggtaagtggagtcatgtga |
513 |
Q |
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| T |
6968112 |
caaggtaaagaaattggtctaagtaagaggcagagaaagctttacacaaattgcacaggtaatggtgaatatgaaaggggaggtaagtggagtcatgtga |
6968211 |
T |
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| Q |
514 |
tatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttacattcagtaaggctaaagagta |
613 |
Q |
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| T |
6968212 |
tatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttacattcagtaaggctaaagagta |
6968311 |
T |
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| Q |
614 |
ttatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaacagga |
677 |
Q |
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| T |
6968312 |
ttatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaacagga |
6968375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 493 - 677
Target Start/End: Complemental strand, 1000780 - 1000598
Alignment:
| Q |
493 |
gaggtaagtggagtcatgtgatatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttac |
592 |
Q |
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| T |
1000780 |
gaggtaaatggagtcatgttatatttgaacatccatcttc-tttgaaacaattgcaatgaatcctaaaa-gaagaaatagattgttgatgatcttgttac |
1000683 |
T |
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| Q |
593 |
attcagtaaggctaaagagtattatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaacagga |
677 |
Q |
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| T |
1000682 |
attcagtaaggctaaagagtattatgcaaaaattggtaagccttggaagataggctatttgttctatggtcctccaggaacagga |
1000598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 670
Target Start/End: Original strand, 6971087 - 6971180
Alignment:
| Q |
577 |
ttgatgatcttgttacattcagtaaggctaaagagtattatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccagg |
670 |
Q |
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| T |
6971087 |
ttgatgatcttattacatttagtaaagctggtgaattctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagg |
6971180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 676
Target Start/End: Original strand, 1800792 - 1800856
Alignment:
| Q |
612 |
tattatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaacagg |
676 |
Q |
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| T |
1800792 |
tattatgcaaaaatcggtaaggcttggaaacgcggttatttactttatggtcctccaggaacagg |
1800856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 673
Target Start/End: Complemental strand, 2833403 - 2833335
Alignment:
| Q |
605 |
taaagagtattatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaac |
673 |
Q |
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| T |
2833403 |
taaagagtattatgctaaagttggaaaggcttggaaacgtggttatctactttatggtcctccaggaac |
2833335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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