View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13375_high_32 (Length: 247)
Name: NF13375_high_32
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 43224089 - 43224316
Alignment:
| Q |
5 |
ccaagaatataaacgacatgagaacnnnnnnnntgctcatgtgcatgctccaatcggtccatctggtcctagccattgaacctaaaatgacagacaatat |
104 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43224089 |
ccaagaataaaaacgacatgagaacaaaaaaaatgctcatgtgcatgctccaatcggcccatctggtcctagccattgaacctaaaatgacagaca---t |
43224185 |
T |
|
| Q |
105 |
tgtagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgcgatggtggacgaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43224186 |
tgtagtaaaattagatatgatatttacactcaacaacaaggaccaaataaaaacaaagttaaagcgatatcaaaccattctggtgtgatggtggacgaac |
43224285 |
T |
|
| Q |
205 |
aaccatcgttaatttcctgatgccacaaaat |
235 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
43224286 |
aatcatcgttaatttcctgatgccacaaaat |
43224316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University