View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_high_35 (Length: 221)
Name: NF13375_high_35
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_high_35 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 31257947 - 31258156
Alignment:
| Q |
12 |
tcatcaaacatatatacagaatttctatatcagcaaaagaaaatacatgatatttaacctaacaggaatccttacataaaagccaaaaaaccaaaagaaa |
111 |
Q |
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| T |
31257947 |
tcatcaaacatatatacagaatttctatatcagcaaaagaaaatacatgatatttaacctaacaggaatccttacataaaagccaaaaaaccaaaagaaa |
31258046 |
T |
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| Q |
112 |
gatcagatcaaagataagctacggtagaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaat |
211 |
Q |
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| T |
31258047 |
gatcagatcaaagataagctacggtagaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaat |
31258146 |
T |
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| Q |
212 |
tataatgagt |
221 |
Q |
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|||||||||| |
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| T |
31258147 |
tataatgagt |
31258156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 31310517 - 31310588
Alignment:
| Q |
137 |
agaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaat |
211 |
Q |
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| T |
31310517 |
agaaatagatatcatactttcgtcggggtgaatagtagtagcttc---aaaacctggaagagatatgaaccaaat |
31310588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 31362837 - 31362873
Alignment:
| Q |
147 |
atcatactttcgtcggggtgaatagtattagctccaa |
183 |
Q |
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| T |
31362837 |
atcatactttcgtcggggtgaatagtattagctccaa |
31362873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 31376936 - 31376974
Alignment:
| Q |
145 |
atatcatactttcgtcggggtgaatagtattagctccaa |
183 |
Q |
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| T |
31376936 |
atatcatactttcgtcggggtgaatagtattagatccaa |
31376974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 31295254 - 31295334
Alignment:
| Q |
128 |
agctacggtagaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaat |
211 |
Q |
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| T |
31295254 |
agctatggtggaaataaatatcatactttcatcagggtgaatagtagtagctcc---aaaagctgttagagatatggaccaaat |
31295334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 31416249 - 31416169
Alignment:
| Q |
128 |
agctacggtagaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaat |
211 |
Q |
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||||| |||||||||| ||||||||||||| || |||||||||||| | | || || |||||||||||||||||||||||| |
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| T |
31416249 |
agctaaggtagaaatatatatcatactttcatcagggtgaatagtagtgg---cagcaaaagctgtaagagatatgaaccaaat |
31416169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 31283841 - 31283877
Alignment:
| Q |
137 |
agaaatagatatcatactttcgtcggggtgaatagta |
173 |
Q |
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| T |
31283841 |
agaaatagatatcatactttcctcggggtgaatagta |
31283877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 31362703 - 31362757
Alignment:
| Q |
12 |
tcatcaaacatatatacagaatttctatatcagcaaaagaaaatacatgatattt |
66 |
Q |
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| T |
31362703 |
tcatcaaatatagatacagaatttctacatgagcaaaaaataatacatgatattt |
31362757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 31389168 - 31389239
Alignment:
| Q |
137 |
agaaatagatatcatactttcgtcggggtgaatagtattagctccaataatagctgtaagagatatgaaccaaat |
211 |
Q |
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||||||| ||||||||||||| || |||||||||||| | ||||| || |||||| |||||||| |||||||| |
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| T |
31389168 |
agaaatacatatcatactttcatcagggtgaatagtagttgctcc---aaaagctgttagagatataaaccaaat |
31389239 |
T |
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