View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_10 (Length: 477)
Name: NF13375_low_10
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 6036188 - 6036638
Alignment:
| Q |
18 |
actgcatctcaatttaaaatgtataaatagaatactgagaagttggaagttgcatctcaataaaactctcaaatatggtttgctttttatcatcacaaat |
117 |
Q |
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| T |
6036188 |
actgcatctcaatttaaaatgtaaaaatagaatactgagaagttggaagttgcatctcaataaaactctcaaatatggtttgctttttatcatcacaaat |
6036287 |
T |
|
| Q |
118 |
agttaccataaatgataattaagccccttccaatgtatctatattttctgtatcatgtaaattttgacgacttcaataacttgtttgtaacaatgagccg |
217 |
Q |
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| T |
6036288 |
agttaccatcaatgataattaagccccttccaatgcatctatattttctgtatcatgtaaattttgacgacttcaataacttgtttgtaacaatgagccg |
6036387 |
T |
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| Q |
218 |
cagaatgtgaaatgatgtgattgtgaatacctagtctctaagaaaattattgctaggtaggaaggtttaggacagtatggtttgaggttatatacacatt |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6036388 |
cacaatgtgaaatgatgtgattgtgaatacctagtctccaagaaaattattgctaggtaggaaggtttaggacagtatggtttgaggttatatacacatt |
6036487 |
T |
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| Q |
318 |
ctgttcaacaattgcgcaattagtgtaacaaaatctattaccaatcctatttggactcgatttaaattataattagaaatttttcattcacattcaaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6036488 |
ctgttcaacaattgcgcaattagtgtaacaaaatctattaccaatcctatttggactcgatttaaattataattagaaatttttcattcacattcaaaca |
6036587 |
T |
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| Q |
418 |
aatgttccaaagcggggtagctcatgatatagactatctttggatgatgtc |
468 |
Q |
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| T |
6036588 |
aatgttccaaagcggggtagctcatgatatagactatctttggatgatgtc |
6036638 |
T |
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