View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_11 (Length: 461)
Name: NF13375_low_11
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_11 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 168 - 456
Target Start/End: Complemental strand, 90014 - 89726
Alignment:
| Q |
168 |
cttgctataggaagggtaatgtgtcaaaatggtaatagaggaatttgatcatccagctctacaattgaactggtggttttcnnnnnnnncttgctgatcc |
267 |
Q |
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| T |
90014 |
cttgctataggaagggtaatgtgtcaaaatggtaatagaggaatttgatcatccagctctacaattgaactggtggttttcttttttttcttgctgatcc |
89915 |
T |
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| Q |
268 |
cccgttgtcacgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatat |
367 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
89914 |
tccgttgtcgcgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatat |
89815 |
T |
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| Q |
368 |
cataaatcaatttctagtagaaagatactaaattttattcatacttacctgaatgtttcatctctaatgcttctcctgcctatgcttct |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
89814 |
cataaatcaatttctagtagaaagatactaaattttattcattcttacctgaatgtttcatctctaatgtttctcctgccaatgtttct |
89726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 447
Target Start/End: Complemental strand, 97742 - 97574
Alignment:
| Q |
280 |
ccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatatcataaatcaatt |
379 |
Q |
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||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||| |||| || || |||||||| ||||||| |
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| T |
97742 |
ccgctagtggactctattaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatattaataacacatatcatatatcaatt |
97643 |
T |
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| Q |
380 |
tctagtagaaagatactaaattttattcatacttacctgaatgtttcatct-ctaatgcttctcctgcc |
447 |
Q |
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| T |
97642 |
tctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgcc |
97574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 90164 - 90075
Alignment:
| Q |
18 |
aaaacagaatcggagtaatttcttaaagagatattggatctctagtctctactctctagtattccttctctccctcacatctattcccaa |
107 |
Q |
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| T |
90164 |
aaaacagaatcggagtaatttcttaaagagatattggatctctagtctctactctctagtattccttctctccctcacatctattcccaa |
90075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 97865 - 97787
Alignment:
| Q |
168 |
cttgctataggaagggtaatgtgtcaaaatggtaatagaggaatttgatcatccagctctacaattgaactggtggtttt |
247 |
Q |
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| T |
97865 |
cttgctacaggaagggtaatgtgtcaaattggtaatagagtaatttgatcattcagctcta-agtttaactggtggtttt |
97787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 168 - 456
Target Start/End: Original strand, 40876269 - 40876557
Alignment:
| Q |
168 |
cttgctataggaagggtaatgtgtcaaaatggtaatagaggaatttgatcatccagctctacaattgaactggtggttttcnnnnnnnncttgctgatcc |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40876269 |
cttgctataggaagggtaatgtgtcaaaatggtaatagaggaatttgatcatccagctctacaattgaactggtggttttcttttttttcttgctgatcc |
40876368 |
T |
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| Q |
268 |
cccgttgtcacgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatat |
367 |
Q |
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| T |
40876369 |
tccgttgtcgcgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatat |
40876468 |
T |
|
| Q |
368 |
cataaatcaatttctagtagaaagatactaaattttattcatacttacctgaatgtttcatctctaatgcttctcctgcctatgcttct |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
40876469 |
cataaatcaatttctagtagaaagatactaaattttattcattcttacctgaatgtttcatctctaatgtttctcctgccaatgtttct |
40876557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 447
Target Start/End: Original strand, 40868540 - 40868708
Alignment:
| Q |
280 |
ccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatatcataaatcaatt |
379 |
Q |
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||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||| |||| || || |||||||| ||||||| |
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| T |
40868540 |
ccgctagtggactctattaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatattaataacacatatcatatatcaatt |
40868639 |
T |
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| Q |
380 |
tctagtagaaagatactaaattttattcatacttacctgaatgtttcatct-ctaatgcttctcctgcc |
447 |
Q |
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| T |
40868640 |
tctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgcc |
40868708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 40876119 - 40876208
Alignment:
| Q |
18 |
aaaacagaatcggagtaatttcttaaagagatattggatctctagtctctactctctagtattccttctctccctcacatctattcccaa |
107 |
Q |
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| T |
40876119 |
aaaacagaatcggagtaatttcttaaagagatattggatctctagtctctactctctagtattccttctctccctcacatctattcccaa |
40876208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 40868417 - 40868495
Alignment:
| Q |
168 |
cttgctataggaagggtaatgtgtcaaaatggtaatagaggaatttgatcatccagctctacaattgaactggtggtttt |
247 |
Q |
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| T |
40868417 |
cttgctacaggaagggtaatgtgtcaaattggtaatagagtaatttgatcattcagctcta-agtttaactggtggtttt |
40868495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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