View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_12 (Length: 392)
Name: NF13375_low_12
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 341668 - 341301
Alignment:
| Q |
17 |
aaaatccaaggcttctctttgtatccgaaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341668 |
aaaatccaaggcttctctttgtatccgaaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatg |
341569 |
T |
|
| Q |
117 |
taagcgcagaagttatggtatctctcccagctacaaagagattgaatgcagcatctcttagaaacttgtcaccaagtgcttcactttcactacccttgnn |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341568 |
taagcgcagaagttatggtatctcttccagctacaaagagattgaatgcagcatctcttagaaacttgtcaccaagtgcttcactttcactacccttgtt |
341469 |
T |
|
| Q |
217 |
nnnnncttctctaatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcg |
316 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341468 |
tttttcttctctaatcaatgccgttaacatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcg |
341369 |
T |
|
| Q |
317 |
cgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
341368 |
cgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctcagtcattttcttctc |
341301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 337630 - 337263
Alignment:
| Q |
17 |
aaaatccaaggcttctctttgtatccgaaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatg |
116 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||| ||||| |
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|
| T |
337630 |
aaaatccaaggcttctctttgtgtccaaaattttcttttatctcttcaacaatcttggcttccaccaaaggatgtgtagcgacaagataaaataaccatg |
337531 |
T |
|
| Q |
117 |
taagcgcagaagttatggtatctctcccagctacaaagagattgaatgcagcatctcttagaaacttgtcaccaagtgcttcactttcactacccttgnn |
216 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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|
| T |
337530 |
taagcgcggaagttatggtatctctccccgctacaaagagattgaatgcagcatctcttagaaacttgttaccaattgattcactttcactacccttgct |
337431 |
T |
|
| Q |
217 |
nnnnncttctctaatcaacgccgttagcatatcaacatgatgagcatcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcg |
316 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||||||||| ||||| | |||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
337430 |
attttcttctctaattaatgccgttagcaaatcaacatgatgagcatcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcg |
337331 |
T |
|
| Q |
317 |
cgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgcctctgtcattttcttctc |
384 |
Q |
| |
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| |||||||| ||||||||| | ||||||||||||||||| |||||||| || |||||||| ||||| |
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|
| T |
337330 |
cattttgaagctatacacgaatataggaattgatcaaatactttgcatgcttcagtcatttttttctc |
337263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 67 - 384
Target Start/End: Complemental strand, 333326 - 333009
Alignment:
| Q |
67 |
aatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatgtaagcgcagaagttatggtatctctcccagctacaaagagattgaatgca |
166 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
333326 |
aatcttggcttccaccaaaggatgtgtagcgacaagataaaataaccatgtaagggcggaagttatggtatctctccccgctacaaagagattgaatgca |
333227 |
T |
|
| Q |
167 |
gcatctcttagaaacttgtcaccaagtgcttcactttcactacccttgnnnnnnncttctctaatcaacgccgttagcatatcaacatgatgagcatcat |
266 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||| |||| ||||||||||||||| ||| |||| |||||||||||||||||| | |
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|
| T |
333226 |
gcatctcttagaaacttgtcgataattgattcactttcactatccttatttttttcttctctaatcaacgtcgtaagcaaatcaacatgatgagcatcgt |
333127 |
T |
|
| Q |
267 |
cactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaataccttgcatgc |
366 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
333126 |
cactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagctatacacgaaaataggaatttatcaaatactttgcatgc |
333027 |
T |
|
| Q |
367 |
ctctgtcattttcttctc |
384 |
Q |
| |
|
||| |||||||| ||||| |
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| T |
333026 |
ctcggtcatttttttctc |
333009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 377354 - 377212
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatgtaagcgcagaagttatggtatctctcc |
143 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| |||||||||||| |||||||| |||||||| | |
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|
| T |
377354 |
aaatgttctttaatctcttcaagaatcttggtttctactaaaggatgtgtagcaacgagataaaataaccatgtaagcgctgaagttatagtatctcttc |
377255 |
T |
|
| Q |
144 |
cagctacaaagagattgaatgcagcatctcttagaaacttgtc |
186 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
377254 |
cggctacaaagagattgaaagcagcatctcttagaaacttgtc |
377212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 347145 - 347284
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatgtaagcgcagaagttatggtatctctcc |
143 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||||||||||||||||| |||||| || |||||||||||||| |||||||| |||||||||| |
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|
| T |
347145 |
aaattttctttaatctgctcaagaatcttagcctccactaaagggtgtgtagcaataagatataaaagccatgtaagcgctgaagttatagtatctctcc |
347244 |
T |
|
| Q |
144 |
cagctacaaagagattgaatgcagcatctcttagaaactt |
183 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
347245 |
cggctacaaaaagattgaatgcgacatctcttagaaactt |
347284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 355804 - 355931
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgtagcaacaagataaaatagccatgtaagcgcagaagttatggtatctctcc |
143 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||| |
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|
| T |
355804 |
aaattttctttaatctcctcaagaatcttagcctccactaaagggtgtgtagcaatgagatagaagagccatgtaagcgctgaagttatagtatctctcc |
355903 |
T |
|
| Q |
144 |
cagctacaaagagattgaatgcagcatc |
171 |
Q |
| |
|
| ||||||||||||||||||||| |||| |
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|
| T |
355904 |
ccgctacaaagagattgaatgcaacatc |
355931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 12176106 - 12176155
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
12176106 |
aaattttctttgatctcttcaagaatcttggcttcaacaaaagggtgtgt |
12176155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 12164581 - 12164615
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttc |
78 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12164581 |
aaattttctttgatctcttcaagaatcttagcttc |
12164615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 3321431 - 3321385
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttccactaaagggtg |
90 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
3321431 |
aaattttctttaatctcttcaagaatcttagcttcaacaaaagggtg |
3321385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 36668436 - 36668485
Alignment:
| Q |
44 |
aaattttctttgatctcttcaagaatcttggcttccactaaagggtgtgt |
93 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
36668436 |
aaattttctctcacctcttcaagaatcttggcttcaacaaaagggtgtgt |
36668485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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