View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13375_low_13 (Length: 388)
Name: NF13375_low_13
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 19844797 - 19844955
Alignment:
| Q |
5 |
tgtcgaacaatatgagcacatatgtgcttctatgtgatacttataaattgctttcaaagtaaattctacttcatatttatgttgatcttctctttaaaat |
104 |
Q |
| |
|
|||||| ||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
19844797 |
tgtcgaccaatatgagcaaatttgtgcttctacgtgatacttataaattgctttcaaagtaaattctacctcatatttctcttgatcttctctttaaaat |
19844896 |
T |
|
| Q |
105 |
ttagatagataaaacttggtgaagaagggagcgaatgagagaatgaggaaaatgagagg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19844897 |
ttagatagataaaacttggtgaagaagggagcgaatgagagaatgaggaaaatgagagg |
19844955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 19845078 - 19845159
Alignment:
| Q |
294 |
gaggtgaaagaacttctctttccatttatttggttnnnnnnn--gtgggaagagaaatttaattattttgaaaatgatatat |
373 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19845078 |
gaggcgaaggaacttctctttccatttatttggttaaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatat |
19845159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 45509554 - 45509431
Alignment:
| Q |
12 |
caatatgagcacatatgtgcttctatgtgatacttataaattgctttcaaagtaaattctacttcatatttatgttgatcttctctttaaaatttagata |
111 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
45509554 |
caatatgagcaaatatgtgcttctacgtgatacttataaattgctttcaaagtaaattctacctcatatttctcttgatcttctctttaaaatttagata |
45509455 |
T |
|
| Q |
112 |
gataaaacttggtgaagaagggag |
135 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45509454 |
gataaaacttggtgaagaagggag |
45509431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 45509338 - 45509258
Alignment:
| Q |
294 |
gaggtgaaagaacttctctttccatttatttggttnnnnnnn-gtgggaagagaaatttaattattttgaaaatgatatat |
373 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45509338 |
gaggcgaaagaacttctctttccatttatttggttaaaaaaaagtgggaagagaaatttaattattttgaaaatgatatat |
45509258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University