View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_14 (Length: 384)

Name: NF13375_low_14
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_14
NF13375_low_14
[»] chr2 (13 HSPs)
chr2 (18-374)||(30191997-30192355)
chr2 (20-126)||(5962707-5962813)
chr2 (24-126)||(30413628-30413730)
chr2 (24-135)||(10550346-10550457)
chr2 (24-68)||(29893683-29893727)
chr2 (30-126)||(12192026-12192122)
chr2 (18-60)||(20507560-20507602)
chr2 (21-63)||(37242316-37242358)
chr2 (30-136)||(23391141-23391247)
chr2 (24-68)||(1298267-1298311)
chr2 (24-68)||(12175282-12175326)
chr2 (24-68)||(43205166-43205210)
chr2 (24-68)||(45202086-45202130)
[»] chr4 (16 HSPs)
chr4 (20-68)||(925016-925064)
chr4 (20-126)||(41495082-41495188)
chr4 (22-68)||(5208281-5208327)
chr4 (22-68)||(24235391-24235437)
chr4 (18-68)||(31048955-31049005)
chr4 (106-140)||(40629237-40629271)
chr4 (24-126)||(8681014-8681116)
chr4 (98-135)||(32901476-32901513)
chr4 (24-68)||(4550407-4550451)
chr4 (24-68)||(8026718-8026762)
chr4 (24-68)||(27001363-27001407)
chr4 (24-68)||(31221486-31221530)
chr4 (24-68)||(39844212-39844256)
chr4 (24-68)||(51224792-51224836)
chr4 (24-68)||(51377247-51377291)
chr4 (24-68)||(56025329-56025373)
[»] chr3 (21 HSPs)
chr3 (24-145)||(40478164-40478285)
chr3 (24-126)||(12044650-12044752)
chr3 (24-126)||(50652461-50652563)
chr3 (24-68)||(25542925-25542969)
chr3 (21-68)||(30633768-30633815)
chr3 (18-68)||(7168-7218)
chr3 (18-68)||(20380843-20380893)
chr3 (24-135)||(23906874-23906985)
chr3 (30-137)||(43441749-43441856)
chr3 (18-68)||(51672930-51672980)
chr3 (18-63)||(20216015-20216060)
chr3 (24-126)||(41877761-41877863)
chr3 (20-133)||(47056414-47056528)
chr3 (24-68)||(20714316-20714360)
chr3 (24-68)||(23163099-23163143)
chr3 (24-68)||(25142701-25142745)
chr3 (24-68)||(28263618-28263662)
chr3 (24-68)||(30400110-30400154)
chr3 (24-68)||(45295693-45295737)
chr3 (24-68)||(46344487-46344531)
chr3 (24-68)||(52454046-52454090)
[»] chr8 (5 HSPs)
chr8 (18-126)||(37562037-37562145)
chr8 (18-68)||(29509333-29509383)
chr8 (24-68)||(13884389-13884433)
chr8 (24-60)||(36178224-36178260)
chr8 (24-68)||(41273588-41273632)
[»] chr1 (9 HSPs)
chr1 (24-136)||(10385487-10385599)
chr1 (30-135)||(42843231-42843336)
chr1 (21-63)||(11038332-11038374)
chr1 (30-68)||(50061930-50061968)
chr1 (24-68)||(13813631-13813675)
chr1 (24-68)||(25130776-25130820)
chr1 (24-68)||(25995533-25995577)
chr1 (24-68)||(26501368-26501412)
chr1 (24-68)||(51571477-51571521)
[»] chr5 (8 HSPs)
chr5 (18-135)||(372607-372724)
chr5 (24-137)||(8959233-8959346)
chr5 (18-63)||(26660370-26660415)
chr5 (18-63)||(26931962-26932007)
chr5 (24-68)||(9596768-9596812)
chr5 (24-68)||(12512866-12512910)
chr5 (24-68)||(15622117-15622161)
chr5 (24-68)||(38010945-38010989)
[»] chr7 (8 HSPs)
chr7 (18-68)||(36108239-36108289)
chr7 (18-68)||(38990168-38990218)
chr7 (98-137)||(43255452-43255491)
chr7 (22-68)||(42204680-42204726)
chr7 (24-68)||(27164791-27164835)
chr7 (24-68)||(29162233-29162277)
chr7 (24-68)||(30864371-30864415)
chr7 (24-68)||(42431796-42431840)
[»] scaffold0155 (1 HSPs)
scaffold0155 (22-68)||(3225-3271)
[»] chr6 (1 HSPs)
chr6 (23-68)||(24723168-24723213)
[»] scaffold0522 (1 HSPs)
scaffold0522 (98-126)||(2400-2428)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 30192355 - 30191997
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatg 117  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| | ||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  30192355 atatttttatcctctctattcatttttctttctccattgttttttaccaataaaaaaagagaaaagcaaggttttcgtccaaattatcatcaattggatg 30192256  T
Q  118 tacaaatatgattactctttaatttaagtttgcatctaaaacaacaaaagacaaacaaaagaaggttcgttgtgctctcattttggtagtgaagcgtaag 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30192255 tacaaatatcattactctttaatttaagtttgcatctaaaacaacaaaagacaaacaaaagaaggttcgttgtgctctcattttggtagtgaagggtaag 30192156  T
Q  218 aggtgtctgaagaagttatttaaaacctgaatcatc--atatttagaggtgattttcttcatttttctgtattgcttctaatctatatttatattaaatt 315  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30192155 aggtgtctgaagaagttatttaaaacctgaatcatcatatatttagaggtgattttcttcatttttctggattgcttctaatctatatttatattaaatt 30192056  T
Q  316 cgctatcaatgatatttgaattatgtctatctatagttcgtaactacactttctctctg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30192055 cgctatcaatgatatttgaattatgtctatctatagttcgtaactacactttctctctg 30191997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 5962707 - 5962813
Alignment:
Q  20 atttttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgta 119  Q
    |||||||| |||||| || |||||||| ||| |||||||||||| ||||       ||||||| ||||||| ||  | ||||||||||||||| ||||||    
T  5962707 atttttattctctctttttctttttctctctccattgtttttgaccaataagaagagagaaaaacaaagttatcaccaaaattatcatcaattagatgta 5962806  T
Q  120 caaatat 126  Q
    |||||||    
T  5962807 caaatat 5962813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 30413730 - 30413628
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||       ||||||||||||||| ||  | ||||| |||| || ||||||||||||    
T  30413730 ttatcctctctcttcctttttctctctccattgtttttgaccaatcaaaagagagaaaagcaaagttgtcaccaaaattgtcattaaatggatgtacaaa 30413631  T
Q  124 tat 126  Q
    |||    
T  30413630 tat 30413628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 10550457 - 10550346
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||       ||||||| ||||||| ||  | || || ||||||| ||||||| ||||    
T  10550457 ttatcctctctcttcctttttctctctccattgtttttgaccaataaaaatagagaaaaacaaagttgtcaacaaagttgtcatcaaatggatgtccaaa 10550358  T
Q  124 tatgattactct 135  Q
    ||| ||||||||    
T  10550357 tatcattactct 10550346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 29893683 - 29893727
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  29893683 ttatcctctctcttcctttttctctctccattgtttttgatcaat 29893727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 12192026 - 12192122
Alignment:
Q  30 tctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaatat 126  Q
    ||||| ||||||||||| ||| |||||||||||| ||||       ||||||||||| ||| ||  | || |||| |||||||||||||||||||||    
T  12192026 tctctcttcctttttctctctccattgtttttgaccaataaaaatagagaaaagcaaggttgtcaccaaagttattatcaattggatgtacaaatat 12192122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 20507602 - 20507560
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttt 60  Q
    ||||||||||||||||| ||||||||||| ||| |||||||||    
T  20507602 atatttttatcctctctcttcctttttctctctccattgtttt 20507560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 37242358 - 37242316
Alignment:
Q  21 tttttatcctctctattcctttttctttcttcattgtttttga 63  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||    
T  37242358 tttttatcctatcttttcatttttctttcttcattgtttttga 37242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 23391141 - 23391247
Alignment:
Q  30 tctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaatatgat 129  Q
    ||||| ||||||||||||||| |||| ||||||||||||       ||||||| ||||||| |||   || |||||||  | ||||||||||||||| ||    
T  23391141 tctctcttcctttttctttctccattatttttgatcaataagaagagagaaaaacaaagttgtcgctaaagttatcatggaatggatgtacaaatatcat 23391240  T
Q  130 tactctt 136  Q
    | |||||    
T  23391241 tcctctt 23391247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 1298267 - 1298311
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||| |||| ||| |||||||||||||||||||||||| ||||    
T  1298267 ttatcccctctcttcttttttctttcttcattgtttttgaccaat 1298311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 12175326 - 12175282
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||| | |||||||||||||||| ||||    
T  12175326 ttatcctctctcttcctttttttctcttcattgtttttgaccaat 12175282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 43205166 - 43205210
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||| |||||| ||||||||||| |||||||||||||||| ||||    
T  43205166 ttattctctctcttcctttttctctcttcattgtttttgaccaat 43205210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 45202130 - 45202086
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||| |||||| ||||||||||| ||| |||||||||||||||||    
T  45202130 ttattctctctcttcctttttctctctccattgtttttgatcaat 45202086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 925064 - 925016
Alignment:
Q  20 atttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  925064 atttttatcctctctattcctttttctctctccattgtttttgatcaat 925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 41495082 - 41495188
Alignment:
Q  20 atttttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgta 119  Q
    |||| ||| |||||| ||||||||||| ||| |||||||||||| ||||       ||||||| ||||||| ||  | ||||||||||||||| ||| ||    
T  41495082 atttctattctctctcttcctttttctctctccattgtttttgaccaataagaagagagaaaaacaaagttgtcaccaaaattatcatcaattagatata 41495181  T
Q  120 caaatat 126  Q
    |||||||    
T  41495182 caaatat 41495188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 5208327 - 5208281
Alignment:
Q  22 ttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  5208327 ttttatcctctctcttcctttttctctctccattgtttttgaccaat 5208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 24235391 - 24235437
Alignment:
Q  22 ttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  24235391 ttttatcctctctcttcctttttctctctccattgtttttgaccaat 24235437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 31048955 - 31049005
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||| ||||||||||| || |||||||| ||| |||||||||||||||||    
T  31048955 atattattatcctctctctttctttttctctctccattgtttttgatcaat 31049005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 40629271 - 40629237
Alignment:
Q  106 atcaattggatgtacaaatatgattactctttaat 140  Q
    ||||||||||||||||||||| |||||||||||||    
T  40629271 atcaattggatgtacaaatatcattactctttaat 40629237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 8681014 - 8681116
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    |||| |||||| ||||||||||| ||| |||||||||||||||||       |  |||||||| ||| ||  | || || ||||||||||||||||||||    
T  8681014 ttattctctctcttcctttttctctctccattgtttttgatcaataagaagaggaaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaa 8681113  T
Q  124 tat 126  Q
    |||    
T  8681114 tat 8681116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 32901476 - 32901513
Alignment:
Q  98 aaattatcatcaattggatgtacaaatatgattactct 135  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  32901476 aaattatcatcaattggatgtacaaatatcactactct 32901513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 4550407 - 4550451
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  4550407 ttatcctctctcttcctttttctctctccattgtttttgaccaat 4550451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 8026762 - 8026718
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  8026762 ttatcctctctcttcctttttctctctccattgtttttgaccaat 8026718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 27001407 - 27001363
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  27001407 ttatcctctctcttcctttttctctctccattgtttttgaccaat 27001363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 31221486 - 31221530
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  31221486 ttatcctctctcttcctttttctctctccattgtttttgaccaat 31221530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 39844256 - 39844212
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||| |||||||||||||||||| ||| |||||||||||| ||||    
T  39844256 ttattctctctattcctttttctctctccattgtttttgaccaat 39844212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 51224836 - 51224792
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| || |||||||| |||||||||||||||| ||||    
T  51224836 ttatcctctctctttctttttctctcttcattgtttttgaccaat 51224792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 51377291 - 51377247
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  51377291 ttatcctctctcttcctttttctctctccattgtttttgaccaat 51377247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 56025329 - 56025373
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  56025329 ttatcctctctgttcctttttctctctccattgtttttgaccaat 56025373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 40478285 - 40478164
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||       ||| ||| ||||||| ||  | ||||| |||| || ||||||||||||    
T  40478285 ttatcctctctcttcctttttctctcttcattgtttttgaccaatcaaaagagaggaaaacaaagttgtcaccaaaattgtcattaaatggatgtacaaa 40478186  T
Q  124 tatgattactctttaatttaag 145  Q
    ||| ||| ||| ||||||||||    
T  40478185 tatcattgctcattaatttaag 40478164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 12044752 - 12044650
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||       || ||||| || ||| || || || || ||||||||||||||||||||    
T  12044752 ttattctctctcttcctttctctctcttcattgtttttgatcaataagaagagaaaaaagtaaggttgtcatcaaagttgtcatcaattggatgtacaaa 12044653  T
Q  124 tat 126  Q
    |||    
T  12044652 tat 12044650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 50652461 - 50652563
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    ||||||||||| |||||||| || ||| |||||||||||| ||||       |||||||||||| || || || ||||| |||||||||  |||||||||    
T  50652461 ttatcctctctcttccttttactctctccattgtttttgaccaataagaagagagaaaagcaaaattgtcatcaaaattgtcatcaattaaatgtacaaa 50652560  T
Q  124 tat 126  Q
    |||    
T  50652561 tat 50652563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 25542969 - 25542925
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||    
T  25542969 ttatcctctctcttcctttttctctcttcattgtttttgaccaat 25542925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30633815 - 30633768
Alignment:
Q  21 tttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||||||||||| ||||||||||| ||||||||||| |||| ||||    
T  30633815 tttttatcctctctcttcctttttctctcttcattgttcttgaccaat 30633768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 7218 - 7168
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||| ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  7218 atattcttatcctctctcttcctttttctctctccattgtttttgaccaat 7168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 20380893 - 20380843
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||||||| |||||| ||| ||||||||||| |||||||||||| ||||    
T  20380893 atatttttatactctctcttcttttttctttctccattgtttttgaccaat 20380843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 23906985 - 23906874
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    |||| |||||| ||| ||||||| ||| |||||||||||| ||||       ||||||||||| ||| ||  | || || ||||||||||||||||||||    
T  23906985 ttattctctctcttcatttttctctctccattgtttttgaccaataagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaa 23906886  T
Q  124 tatgattactct 135  Q
    ||| | ||||||    
T  23906885 tatcactactct 23906874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 43441749 - 43441856
Alignment:
Q  30 tctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaatatgat 129  Q
    ||||| ||| ||||||| ||| |||| ||||||| ||||       |||||||| || ||| ||||| || || ||||||||||||||||||||||| |     
T  43441749 tctctcttcatttttctctctccattatttttgaccaataaaaaaagagaaaagtaaggttgtcgtcaaagttgtcatcaattggatgtacaaatatcac 43441848  T
Q  130 tactcttt 137  Q
    ||||||||    
T  43441849 tactcttt 43441856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 51672930 - 51672980
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||||||| |||||| ||||||||||| ||| |||||||||||| ||||    
T  51672930 atatttttattctctctcttcctttttctctctccattgtttttgaccaat 51672980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 20216015 - 20216060
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttga 63  Q
    |||||||||  |||||| ||||||||||||||| ||||||||||||    
T  20216015 atatttttactctctctcttcctttttctttctgcattgtttttga 20216060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 41877761 - 41877863
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||       ||||||| ||||||| ||  | || || |||| || ||||||||||||    
T  41877761 ttatcctctctcttcctttttctctctccattgtttttgaccaatcaaaaaagagaaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaa 41877860  T
Q  124 tat 126  Q
    |||    
T  41877861 tat 41877863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 47056528 - 47056414
Alignment:
Q  20 atttttatcctctctattcctttttctttcttcattg-tttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgt 118  Q
    ||||||||| ||||| ||||||||||| |||  |||| ||||||| ||||       |||||||| || ||| || || ||||| ||||||| |||||||    
T  47056528 atttttatcttctctcttcctttttctctctcaattggtttttgaccaatagaaagagagaaaagtaaggttgtcatcaaaattgtcatcaactggatgt 47056429  T
Q  119 acaaatatgattact 133  Q
    |||||||| ||||||    
T  47056428 acaaatatcattact 47056414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 20714316 - 20714360
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  20714316 ttatcctctctcttcctttttctctctccattgtttttgaccaat 20714360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 23163143 - 23163099
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| |||||||| ||||||| ||||    
T  23163143 ttatcctctctcttcctttttctctcttcattctttttgaccaat 23163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 25142701 - 25142745
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  25142701 ttatcctctctcttcctttttctctctccattgtttttgaccaat 25142745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 28263618 - 28263662
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  28263618 ttatcctctctcttcctttttctctctccattgtttttgaccaat 28263662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 30400154 - 30400110
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  30400154 ttatcctctctcttcctttttctctctccattgtttttgaccaat 30400110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 45295737 - 45295693
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  45295737 ttatcctctctcttcctttttctctctacattgtttttgaccaat 45295693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 46344487 - 46344531
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||||||| |||| ||||||| ||||    
T  46344487 ttatcctctctcttcctttttctttctccattatttttgaccaat 46344531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 52454090 - 52454046
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  52454090 ttatcctctctcttcctttttctctctccattgtttttgaccaat 52454046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 37562145 - 37562037
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatg 117  Q
    ||||| |||| |||||| ||||||||||||||| |||||||||||| ||||       ||||||| ||| ||| || || || || ||||||||||||||    
T  37562145 atattcttattctctctcttcctttttctttctccattgtttttgaccaataagaagagagaaaaacaaggttgtcatcaaagttgtcatcaattggatg 37562046  T
Q  118 tacaaatat 126  Q
    |||||||||    
T  37562045 tacaaatat 37562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 29509333 - 29509383
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||| ||||    
T  29509333 atattattatcctctctcttcctttttctctcttcattgtttttgaccaat 29509383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 13884389 - 13884433
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||| ||||| ||||||||||| ||| |||||||||||||||||    
T  13884389 ttatcatctctcttcctttttctctctccattgtttttgatcaat 13884433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 36178260 - 36178224
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttt 60  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  36178260 ttatcctctctcttcctttttctctcttcattgtttt 36178224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 41273588 - 41273632
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  41273588 ttatcctctctcttcctttttctctctccattgtttttgaccaat 41273632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 10385487 - 10385599
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||       |||||||||||| || ||  | || ||||||| || ||||||||||||    
T  10385487 ttatcctctctattcctttttctctctccattgtttttgaccaatcaaaaaagagaaaagcaaaattgtcaccaaagttatcattaaatggatgtacaaa 10385586  T
Q  124 tatgattactctt 136  Q
    ||| ||| |||||    
T  10385587 tatcattgctctt 10385599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 42843336 - 42843231
Alignment:
Q  30 tctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaatatgat 129  Q
    ||||| || |||||||| ||| |||||||||||| ||||       ||||||| ||| ||| ||  | ||||||||||||||||||||||||||||| |     
T  42843336 tctcttttactttttctctctccattgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaaattatcatcaattggatgtacaaatatcac 42843237  T
Q  130 tactct 135  Q
    ||||||    
T  42843236 tactct 42843231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 11038332 - 11038374
Alignment:
Q  21 tttttatcctctctattcctttttctttcttcattgtttttga 63  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||    
T  11038332 tttttattctctctcttcctttttctctcttcattgtttttga 11038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 50061968 - 50061930
Alignment:
Q  30 tctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  50061968 tctcttttcctttttctctcttcattgtttttgatcaat 50061930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 13813631 - 13813675
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  13813631 ttatcctctctcttcctttttctctctccattgtttttgaccaat 13813675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 25130776 - 25130820
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||  |||||||||||||||| ||||    
T  25130776 ttatcctctctcttcctttttccctcttcattgtttttgaccaat 25130820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 25995533 - 25995577
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  25995533 ttatcctctctcttcctttttctctctccattgtttttgaccaat 25995577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 26501368 - 26501412
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  26501368 ttatcctctctattcatttttctctctccattgtttttgaccaat 26501412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 51571477 - 51571521
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||| |||||| ||||||||||| |||||||||||||||| ||||    
T  51571477 ttattctctctcttcctttttctctcttcattgtttttgaccaat 51571521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 372724 - 372607
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatg 117  Q
    |||||||||| | |||| || |||||||| ||||||||||||||||  |||        |||||||||| ||| ||  | ||||||||||||||||||||    
T  372724 atatttttattccctcttttactttttctctcttcattgtttttgactaataaaaagatagaaaagcaaggttgtcaccaaaattatcatcaattggatg 372625  T
Q  118 tacaaatatgattactct 135  Q
    ||||||||| | ||||||    
T  372624 tacaaatatcactactct 372607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 8959233 - 8959346
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaatnnnnnnngagaaaagcaaagttttcgtccaaattatcatcaattggatgtacaaa 123  Q
    |||| |||||| || |||||||| ||| |||||||||||| ||||       ||||||| ||| ||| ||| | || || ||||||||||||||||||||    
T  8959233 ttattctctctctttctttttctctctccattgtttttgaccaataaaaagagagaaaaacaaggttgtcgccaaagttgtcatcaattggatgtacaaa 8959332  T
Q  124 tatgattactcttt 137  Q
    ||| | ||||||||    
T  8959333 tatcactactcttt 8959346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 26660415 - 26660370
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttga 63  Q
    |||||||||| |||||| ||||||||||| ||| ||||||||||||    
T  26660415 atatttttattctctctcttcctttttctctctccattgtttttga 26660370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 26932007 - 26931962
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttga 63  Q
    |||||||||| |||||| ||||||||||| ||| ||||||||||||    
T  26932007 atatttttattctctctcttcctttttctctctccattgtttttga 26931962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 9596812 - 9596768
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  9596812 ttatcctctctcttcctttttctctctccattgtttttgaccaat 9596768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 12512866 - 12512910
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  12512866 ttatcctctctcttcctttttctctctccattgtttttgaccaat 12512910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 15622117 - 15622161
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  15622117 ttatcctctctcttcctttttctctctccattgtttttgaccaat 15622161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 38010945 - 38010989
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  38010945 ttatcctctctcttcctttttctctctccattgtttttgaccaat 38010989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 36108239 - 36108289
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||||||| |||||| ||| ||||||| |||||||||||||||||||||    
T  36108239 atatttttattctctctcttcttttttctctcttcattgtttttgatcaat 36108289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 38990168 - 38990218
Alignment:
Q  18 atatttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||| ||||    
T  38990168 atatttttatcctctctcttcatttttctttctccattgtttttgaccaat 38990218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 43255491 - 43255452
Alignment:
Q  98 aaattatcatcaattggatgtacaaatatgattactcttt 137  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  43255491 aaattatcatcaattagatgtacaaatatcattactcttt 43255452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 42204726 - 42204680
Alignment:
Q  22 ttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||| |||||| ||||||||||| |||||||||||||||| ||||    
T  42204726 ttttattctctctcttcctttttctctcttcattgtttttgaccaat 42204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 27164835 - 27164791
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||||| | |||||||||||| ||||    
T  27164835 ttatcctctctcttcctttttctttttccattgtttttgaccaat 27164791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 29162277 - 29162233
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| || |||||||| ||| |||||||||||||||||    
T  29162277 ttatcctctctctttctttttctctctccattgtttttgatcaat 29162233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 30864415 - 30864371
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  30864415 ttatcctctctcttcctttttctctctccattgtttttgaccaat 30864371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 42431796 - 42431840
Alignment:
Q  24 ttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  42431796 ttatcctctctcttcctttttctctctccattgtttttgaccaat 42431840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 3271 - 3225
Alignment:
Q  22 ttttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    |||||| |||||| ||||||||||| ||| |||||||||||||||||    
T  3271 ttttattctctctcttcctttttctctctccattgtttttgatcaat 3225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 24723213 - 24723168
Alignment:
Q  23 tttatcctctctattcctttttctttcttcattgtttttgatcaat 68  Q
    ||||| |||||| ||| ||||||| |||||||||||||||||||||    
T  24723213 tttattctctctcttcttttttctctcttcattgtttttgatcaat 24723168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 2428 - 2400
Alignment:
Q  98 aaattatcatcaattggatgtacaaatat 126  Q
    |||||||||||||||||||||||||||||    
T  2428 aaattatcatcaattggatgtacaaatat 2400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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