View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_15 (Length: 370)

Name: NF13375_low_15
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_15
NF13375_low_15
[»] chr3 (3 HSPs)
chr3 (121-348)||(47430614-47430841)
chr3 (1-61)||(47430902-47430962)
chr3 (1-61)||(50880030-50880090)
[»] chr7 (5 HSPs)
chr7 (1-61)||(9392519-9392579)
chr7 (1-49)||(43114812-43114861)
chr7 (9-57)||(37236169-37236217)
chr7 (1-41)||(29186999-29187039)
chr7 (1-36)||(12630905-12630940)
[»] chr5 (1 HSPs)
chr5 (1-61)||(13277954-13278013)
[»] chr4 (1 HSPs)
chr4 (1-41)||(18091925-18091965)
[»] chr1 (4 HSPs)
chr1 (9-57)||(17244560-17244608)
chr1 (1-41)||(52759708-52759748)
chr1 (152-301)||(12496535-12496681)
chr1 (152-223)||(22855811-22855883)
[»] chr8 (1 HSPs)
chr8 (1-41)||(9244400-9244440)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 121 - 348
Target Start/End: Complemental strand, 47430841 - 47430614
Alignment:
Q  121 cctctcatgttttttgggcagctctcactaactctccctcctctgtaaatctctctcacccgagttcactgaccaccgtcgtcccactcgtcggcctatg 220  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47430841 cctctcatgttttttgggcagctctcacaaactctccctcctctgtaaatctctctcacccgagttcactgaccactgtcgtcccactcgtcggcctatg 47430742  T
Q  221 gccatcgacgtggcatcccactgtatctatctccgaccccatacaactagatctggcctcaccaaatctcctcaccaccaccacgccgtttcaacaccac 320  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  47430741 gccatcgacgtggcatcccactgtatctatctccgatcccatacaactagatctggcctcaccaaatctcctctccaccaccacgtcgtttcaacaccac 47430642  T
Q  321 catggctctccgatcccaccgtccttag 348  Q
    ||||||||||||||||||||||||||||    
T  47430641 catggctctccgatcccaccgtccttag 47430614  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 47430962 - 47430902
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47430962 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 47430902  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 50880030 - 50880090
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 61  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50880030 acaccctccactcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 50880090  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9392579 - 9392519
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 61  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  9392579 acaccctccaatcacctcaccataacgatcccaaaatcaaaagaagaaaaatccattattt 9392519  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43114861 - 43114812
Alignment:
Q  1 acaccctccaatcactcc-accataaccatcccaaaatcaaaagaagaaa 49  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43114861 acaccctccaatcactcccaccataaccatcccaaaatcaaaagaagaaa 43114812  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 37236169 - 37236217
Alignment:
Q  9 caatcactccaccataaccatcccaaaatcaaaagaagaaaaatccatt 57  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  37236169 caatctctccaccttaaccatcccaaaatcaaaagaagaaaaatccatt 37236217  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29186999 - 29187039
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaa 41  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  29186999 acaccctccaatcactccatcataaccatcccaaaatcaaa 29187039  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12630905 - 12630940
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  12630905 acaccctccaatcactccaccataaccatcccaaaa 12630940  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13278013 - 13277954
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaaagaagaaaaatccattattt 61  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13278013 acaccctctaatcactccaccataaccatctcaaaatcaaaagaag-aaaatccattattt 13277954  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18091925 - 18091965
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18091925 acaccctccaatcactccaccataaccatcccaaaatcaaa 18091965  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 17244560 - 17244608
Alignment:
Q  9 caatcactccaccataaccatcccaaaatcaaaagaagaaaaatccatt 57  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  17244560 caatctctccaccttaaccatcccaaaatcaaaagaagaaaaatccatt 17244608  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52759708 - 52759748
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52759708 acaccctccaatcactccaccataaccatcccaaaatcaaa 52759748  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 301
Target Start/End: Original strand, 12496535 - 12496681
Alignment:
Q  152 ctctccctcctctgtaaatctctctcacc-cgagttcactgaccaccgtcgtcccactcgtcggcctatggccatcgacgtggcatcccactgtatctat 250  Q
    |||||||| ||||| |||||||||||| | ||||||||| | |||||  ||||||||||| || || ||||||  || |||     ||||||||||||||    
T  12496535 ctctcccttctctgcaaatctctctcatctcgagttcaccggccaccaacgtcccactcgccgtccgatggccgccggcgt-----cccactgtatctat 12496629  T
Q  251 ctccgaccccatacaactagatctggcc-tcaccaaatctcctcaccaccac 301  Q
    ||| |||||||||| ||| |||  |||| || ||||||||||||||||||||    
T  12496630 ctctgaccccatactactcgatgcggccatcgccaaatctcctcaccaccac 12496681  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 22855883 - 22855811
Alignment:
Q  152 ctctccctcctctgtaaatctctctca-cccgagttcactgaccaccgtcgtcccactcgtcggcctatggcc 223  Q
    |||||||||||||| |||||||| ||| ||||||||||| |||||| | || ||||||||||| || ||||||    
T  22855883 ctctccctcctctgcaaatctctgtcatcccgagttcaccgaccactgacgccccactcgtcgtccgatggcc 22855811  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9244400 - 9244440
Alignment:
Q  1 acaccctccaatcactccaccataaccatcccaaaatcaaa 41  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  9244400 acaccctccaatcactccatcataaccatcccaaaatcaaa 9244440  T

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