View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_17 (Length: 365)

Name: NF13375_low_17
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_17
NF13375_low_17
[»] chr3 (1 HSPs)
chr3 (15-352)||(12002277-12002615)
[»] chr4 (1 HSPs)
chr4 (15-98)||(18146294-18146377)
[»] chr7 (2 HSPs)
chr7 (15-98)||(25631748-25631830)
chr7 (15-94)||(48191513-48191589)
[»] chr5 (2 HSPs)
chr5 (15-98)||(43173574-43173657)
chr5 (15-52)||(37520466-37520503)
[»] chr2 (1 HSPs)
chr2 (31-98)||(28673525-28673592)
[»] scaffold0308 (1 HSPs)
scaffold0308 (169-208)||(10494-10533)
[»] scaffold0654 (1 HSPs)
scaffold0654 (164-213)||(98-147)
[»] scaffold0014 (1 HSPs)
scaffold0014 (171-219)||(119181-119229)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 12002615 - 12002277
Alignment:
Q  15 agttataactgttcaaatggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggccaactctcctagaaaatt 114  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12002615 agttataaatgttcaaatggattctgtaataataaggtcggctaacccatatttggcgactccagaagcaaccattcatggccaactctcctagaaaatt 12002516  T
Q  115 tatctattctaaccttccactagacaccaattcattcactgcaggctatcagccactatcacacttaaccttttcttaccattccttaacag-aaatcca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12002515 tatctattctaaccttccactagacaccaattcattcactgcaggctatcagccactatcacacttaaccttttcttaccattccttaacagaaaatcca 12002416  T
Q  214 tcccctcgtatagccatcatcaaagtttaaactatgtcagtaagcaagaaacagtaagcatcaatatcgtctactttcttcatccgcaagccatacaaac 313  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12002415 tcccctcatatagccatcatcaaagtttaaactatgtcagtaagaaagaaacagtaagcatcaatatcgtctactttcttcatccgcaagccatacaaac 12002316  T
Q  314 ccaatatgctatggattaccacacaccctaatattcttc 352  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  12002315 ccaatatgctatggattaccacacaccctaatatacttc 12002277  T

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Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 18146377 - 18146294
Alignment:
Q  15 agttataactgttcaaatggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggcca 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18146377 agttataactgttcaaatggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggcca 18146294  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 25631830 - 25631748
Alignment:
Q  15 agttataactgttcaaatggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggcca 98  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  25631830 agttataa-tgttcaaatggattctgtaataataagatcggctaacccatatttggcgactccatgagcaaccattcatggcca 25631748  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 48191589 - 48191513
Alignment:
Q  15 agttataactgttcaaatggattctgtaataa-taagatcggctaacccatatttggcgactccagaagcaaccattcatg 94  Q
    ||||||||||||||    |||||||||||||| |||||||  ||||||||| |||||||||||||  ||||||||||||||    
T  48191589 agttataactgttc----ggattctgtaataaataagatcaactaacccatctttggcgactccacgagcaaccattcatg 48191513  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 43173574 - 43173657
Alignment:
Q  15 agttataactgttcaaatggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggcca 98  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  43173574 agttataactattcaaatggattctgtaataataagatcggctaacccatatttagcgactccggaagcaaccattcatagcca 43173657  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 37520466 - 37520503
Alignment:
Q  15 agttataactgttcaaatggattctgtaataataagat 52  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  37520466 agttctaactgttcaaatggattctgtaacaataagat 37520503  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 28673525 - 28673592
Alignment:
Q  31 atggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggcca 98  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  28673525 atggattctgtaataataagatcggctaacccatatttgacgactccagaagcaatcattcatagcca 28673592  T

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Target: scaffold0308 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 10533 - 10494
Alignment:
Q  169 actatcacacttaaccttttcttaccattccttaacagaa 208  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  10533 actatcacacttaaccttttcttaccattcctgaacagaa 10494  T

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Target: scaffold0654 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 98 - 147
Alignment:
Q  164 cagccactatcacacttaaccttttcttaccattccttaacagaaatcca 213  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||||||||    
T  98 cagcaactaacacacttaacctttgcttaccattcctgaacagaaatcca 147  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 119181 - 119229
Alignment:
Q  171 tatcacacttaaccttttcttaccattccttaacagaaatccatcccct 219  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||    
T  119181 tatcacacttaacctttgcttaccactccataacagaaatctatcccct 119229  T

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