View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_20 (Length: 343)
Name: NF13375_low_20
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 5822484 - 5822163
Alignment:
| Q |
8 |
ttggaagagtttataaaaagtgacatttttcatcatagaaatgatacaacagtttctactcgaagcgcataactcatttgagtattctctaaaataaaat |
107 |
Q |
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| T |
5822484 |
ttggaagagtttataaaaagtgacatttttcatcatagaaatgatacaacagtttctactcgaagtgcataactcatttgagtattcgctaaaataaaat |
5822385 |
T |
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| Q |
108 |
gaaagaaattaccgataagggtgtcaactttaactggttttggatttgacttagaaagcttcccttgtaaagaaaatacaagatgtgagagttttggtac |
207 |
Q |
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| T |
5822384 |
gaaagaaattaccgataagggtgtcaactttaactggttttggatttgacttagaaagcttcccttgtaaagaaaatccaagatgtgagagttttggtac |
5822285 |
T |
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| Q |
208 |
catattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaaccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccg |
307 |
Q |
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| T |
5822284 |
catattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaaccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccg |
5822185 |
T |
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| Q |
308 |
atgcatatttcaagccttttct |
329 |
Q |
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| T |
5822184 |
atgcatatttcaagccttttct |
5822163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 134 - 329
Target Start/End: Original strand, 4907895 - 4908090
Alignment:
| Q |
134 |
actttaactggttttggatttgacttagaaagcttcccttgtaaagaaaatacaagatgtgagagttttggtaccatattcttatctaaaagaatggttt |
233 |
Q |
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| T |
4907895 |
acttcaactggttttggcttagagttaggaagcttcccttgtaaggaaaatccaagatgcgagagttttggtaccatattcttatctaaaagaatggttt |
4907994 |
T |
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| Q |
234 |
gaggttttatgtcacaatgaaaaaccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccgatgcatatttcaagccttttct |
329 |
Q |
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| T |
4907995 |
gaggctttatgtcacagtgaaaaattgcgcgctttgctccagtgtgaaggtagtgtagtccttttgcagctccaatgcatatttctagccttttct |
4908090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 329
Target Start/End: Original strand, 4903984 - 4904166
Alignment:
| Q |
147 |
ttggatttgacttagaaagcttcccttgtaaagaaaatacaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtc |
246 |
Q |
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| T |
4903984 |
ttggctttgatttagaacgcttctcttgcaaggaaattccaagttgtgcgagttttggtaccattttgttatctaaaagaattgtttgaggctttatatc |
4904083 |
T |
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| Q |
247 |
acaatgaaaaaccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccgatgcatatttcaagccttttct |
329 |
Q |
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| T |
4904084 |
acagtgaaaaattgcgcgctttgctccggtgtgaagatagtgtagtcctcttgcaactccaatgcatatttcaagccttttct |
4904166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 329
Target Start/End: Complemental strand, 4928297 - 4928126
Alignment:
| Q |
158 |
ttagaaagcttcccttgtaaagaaaatacaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaa |
257 |
Q |
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| T |
4928297 |
ttagaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgttctgtggaattacgtcacggtggaaaa |
4928198 |
T |
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| Q |
258 |
ccgtgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccgatgcatatttcaagccttttct |
329 |
Q |
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| T |
4928197 |
tcggacgctttgttccagtgtgaagatagtgtagtccttttgcagctccaatgcatatttcaagccttttct |
4928126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 327
Target Start/End: Complemental strand, 4922053 - 4921887
Alignment:
| Q |
161 |
gaaagcttcccttgtaaagaaaatacaagatgtgagagttttggtaccatattcttatctaaaagaatggtttgaggttttatgtcacaatgaaaaaccg |
260 |
Q |
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| T |
4922053 |
gaaagcttcccttgtaaggataatccaaattgcgagagttttggtgccatattgttatccaaaagaatgctgtaaggctttacgtcacggtggaaaatcg |
4921954 |
T |
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| Q |
261 |
tgcgctttgttccagtgtgaaggtagtgtagtcccttagcagctccgatgcatatttcaagcctttt |
327 |
Q |
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| T |
4921953 |
ggcgctttgctccagtgtgaaggtagtgcagtccttttgcagctccaatgcatatttcaagcctttt |
4921887 |
T |
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