View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_21 (Length: 340)

Name: NF13375_low_21
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_21
NF13375_low_21
[»] chr8 (5 HSPs)
chr8 (13-190)||(41014326-41014503)
chr8 (194-336)||(41015105-41015247)
chr8 (181-308)||(1605267-1605393)
chr8 (183-308)||(11142697-11142821)
chr8 (189-308)||(1662536-1662654)
[»] chr1 (7 HSPs)
chr1 (183-307)||(4328782-4328906)
chr1 (182-308)||(35161947-35162072)
chr1 (189-308)||(29395401-29395519)
chr1 (189-308)||(30410805-30410923)
chr1 (181-264)||(41866976-41867059)
chr1 (189-264)||(28549359-28549434)
chr1 (183-263)||(37179718-37179797)
[»] chr3 (5 HSPs)
chr3 (189-308)||(4865120-4865238)
chr3 (187-308)||(55041464-55041584)
chr3 (189-284)||(30766014-30766108)
chr3 (197-264)||(23217047-23217113)
chr3 (188-220)||(46595821-46595853)
[»] chr7 (4 HSPs)
chr7 (189-308)||(13946647-13946765)
chr7 (193-320)||(34575602-34575727)
chr7 (197-264)||(33865605-33865671)
chr7 (183-220)||(20389908-20389945)
[»] chr4 (3 HSPs)
chr4 (187-264)||(34703765-34703842)
chr4 (192-264)||(43046273-43046345)
chr4 (182-218)||(7131295-7131331)
[»] chr6 (4 HSPs)
chr6 (183-263)||(6309166-6309246)
chr6 (197-264)||(11074870-11074936)
chr6 (183-220)||(31112468-31112505)
chr6 (188-220)||(4434986-4435018)
[»] chr2 (1 HSPs)
chr2 (189-309)||(17830842-17830960)
[»] scaffold0524 (1 HSPs)
scaffold0524 (183-218)||(5126-5161)
[»] chr5 (1 HSPs)
chr5 (187-220)||(37720060-37720093)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 41014326 - 41014503
Alignment:
Q  13 aatataagacggtgatctaatcctaagaattttccacaaagtggtgatgacggcatagagctatttactcgattgttgcagacattggcagagtaagaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41014326 aatataagacggtgatctaatcctaagaattttccacaaagtggtgatgacggcgtagagctatttactcgattgttgcagacattggcagagtaagaaa 41014425  T
Q  113 tagtcaattttgaatgaacacagtgtaaccctctttcaaatatccaactgacaaaaccaagggataacaaatccttat 190  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41014426 tagtcaattttgaatgaacacactgtaaccctctttcaaatatccacctgacaaaaccaagggataacaaatccttat 41014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 194 - 336
Target Start/End: Original strand, 41015105 - 41015247
Alignment:
Q  194 tattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatt 293  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015105 tattatctaatcctaaagtacaatgcacataactatttcaaaactctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatt 41015204  T
Q  294 tttgactttcaaatccagtacctttaaacctagcgctctaaac 336  Q
    ||||| |||||||||||||||| || |||||||||||||||||    
T  41015205 tttgagtttcaaatccagtacccttcaacctagcgctctaaac 41015247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 1605393 - 1605267
Alignment:
Q  181 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccac 280  Q
    ||||||||||| |||||||||||||||||| ||| ||||| | || ||||  |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  1605393 aaatccttatcattattatctaatcctaaactacgatgcatacaactattgtaaaaccctaatccttgatttagagcgggaaaattatgca-ttaaccac 1605295  T
Q  281 atttaatgccatttttgactttcaaatc 308  Q
    | |||||| ||||||||| |||||||||    
T  1605294 acttaatgacatttttgaatttcaaatc 1605267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 11142697 - 11142821
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 282  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||| |||  || |||||||||||||||  | ||||||||||    
T  11142697 atccttatccttattatctaatcctaaactacaatgcacataacaattgcaaaaccctaatcattggctttgagcgggaaaattgt-tatttaaccacat 11142795  T
Q  283 ttaatgccatttttgactttcaaatc 308  Q
    |||||| ||||||||| |||||||||    
T  11142796 ttaatggcatttttgaatttcaaatc 11142821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 1662654 - 1662536
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatcctt-gatttagagcgggaaaattgtgcacttaaccacatttaat 287  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||| ||||| |||||||||||||||| | ||||||| |||||||    
T  1662654 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttagattt-gagcgggaaaattgtg-atttaaccatatttaat 1662557  T
Q  288 gccatttttgactttcaaatc 308  Q
    | ||||||||| |||||||||    
T  1662556 gtcatttttgaatttcaaatc 1662536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 4328906 - 4328782
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 282  Q
    |||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4328906 atccttatccttattatctaatcctaaagtacaatgcacacaactttttcaaaaccctaatccttggttttgagcgggaaaattgtgcacttaaccacat 4328807  T
Q  283 ttaatgccatttttgactttcaaat 307  Q
    ||||||| | |||||| ||||||||    
T  4328806 ttaatgctaattttgaatttcaaat 4328782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 308
Target Start/End: Original strand, 35161947 - 35162072
Alignment:
Q  182 aatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccaca 281  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||  || ||||||||||||| || | ||||||| |    
T  35161947 aatccttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggatttgagcgggaaaattatg-atttaaccaaa 35162045  T
Q  282 tttaatgccatttttgactttcaaatc 308  Q
    ||||||| ||||||||| |||||||||    
T  35162046 tttaatggcatttttgaatttcaaatc 35162072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 29395519 - 29395401
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 288  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||| |||  || |||||||||||||||| | ||||||||||||||||    
T  29395519 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcattggctttgagcgggaaaattgtg-atttaaccacatttaatg 29395421  T
Q  289 ccatttttgactttcaaatc 308  Q
     ||||||||| |||||||||    
T  29395420 acatttttgaatttcaaatc 29395401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 30410923 - 30410805
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 288  Q
    |||||||||||||||| ||||| ||||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | ||||||||||||||||    
T  30410923 atccttattatctaattctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaatg 30410825  T
Q  289 ccatttttgactttcaaatc 308  Q
     ||||||||| |||||||||    
T  30410824 gcatttttgaatttcaaatc 30410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 41866976 - 41867059
Alignment:
Q  181 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  41866976 aaatccttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 41867059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 28549434 - 28549359
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    ||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  28549434 atccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 28549359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 37179718 - 37179797
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaa 263  Q
    |||||||||||||||||||||||||||  ||||||| | | || || | |||||||||||| ||| | || ||||||||||    
T  37179718 atccttatccttattatctaatcctaacctacaatgtaaacaaata-tgcaaaaccctaattctttagtttgagcgggaaa 37179797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 4865120 - 4865238
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 288  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  4865120 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatg 4865218  T
Q  289 ccatttttgactttcaaatc 308  Q
     ||||||||| |||||||||    
T  4865219 gcatttttgaatttcaaatc 4865238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 308
Target Start/End: Complemental strand, 55041584 - 55041464
Alignment:
Q  187 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaa 286  Q
    |||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | ||||||||||||||    
T  55041584 ttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaa 55041486  T
Q  287 tgccatttttgactttcaaatc 308  Q
    || ||||||||| |||||||||    
T  55041485 tggcatttttgaatttcaaatc 55041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 30766108 - 30766014
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacattt 284  Q
    |||||||||||||||||||||| ||||||||||| || |  |  ||||||||||||  |||||||||||||||||||| ||| |||||| ||||||    
T  30766108 atccttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatctatgatttagagcgggaaaattttgc-cttaactacattt 30766014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 23217113 - 23217047
Alignment:
Q  197 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    |||| |||||||| |||||||||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  23217113 tatccaatcctaatgtacaatgcacagaag-acctaaaaaccctaatccttgatttagagcgggaaaa 23217047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 46595853 - 46595821
Alignment:
Q  188 tatccttattatctaatcctaaagtacaatgca 220  Q
    ||||||||||||||||||||||| |||||||||    
T  46595853 tatccttattatctaatcctaaactacaatgca 46595821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 13946647 - 13946765
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 288  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  13946647 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatg 13946745  T
Q  289 ccatttttgactttcaaatc 308  Q
      |||||||| |||||||||    
T  13946746 ggatttttgaatttcaaatc 13946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 34575602 - 34575727
Alignment:
Q  193 ttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccat 292  Q
    |||||||||||||||||  ||||||||||| ||   || |||||||||||||||||  || ||||||||||| |||| | | |||||||||||||  |||    
T  34575602 ttattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtg-attaaaccacatttaattgcat 34575699  T
Q  293 ttttgactttcaaatccagtacctttaa 320  Q
    |||||| |||||||||| ||||| ||||    
T  34575700 ttttgaatttcaaatcctgtacccttaa 34575727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 33865605 - 33865671
Alignment:
Q  197 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    ||||||||||||| |||||||||||| ||| |  | |||||||||||| |||||||||||||||||||    
T  33865605 tatctaatcctaatgtacaatgcacacaag-acctaaaaaccctaatctttgatttagagcgggaaaa 33865671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 20389908 - 20389945
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgca 220  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20389908 atccttatccttattatctaatcctaaactacaatgca 20389945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 34703765 - 34703842
Alignment:
Q  187 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    ||||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  34703765 ttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 34703842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 43046345 - 43046273
Alignment:
Q  192 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    |||||||| ||||||||| |||||||| | | ||| ||||||||||||||| ||| ||||| |||||| ||||    
T  43046345 cttattatttaatcctaatgtacaatgtaaacaagcatttcaaaaccctaaacctagattttgagcggaaaaa 43046273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 7131295 - 7131331
Alignment:
Q  182 aatccttatccttattatctaatcctaaagtacaatg 218  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7131295 aatccttatccttattacctaatcctaaactacaatg 7131331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 6309246 - 6309166
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaa 263  Q
    ||||||||||||||||||||||||||| |||||||| | | |||  |||||||||| ||| ||| ||||| ||||||||||    
T  6309246 atccttatccttattatctaatcctaatgtacaatgtaaacaagcctttcaaaaccttaaacctagattttgagcgggaaa 6309166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 11074870 - 11074936
Alignment:
Q  197 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 264  Q
    ||||||||||||| |||||||||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  11074870 tatctaatcctaatgtacaatgcacacaag-acctaaaaaccctaatccttgatttagagcgggaaaa 11074936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 31112505 - 31112468
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgca 220  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31112505 atccttatccttattatcgaatcctaaagtacaatgca 31112468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 4434986 - 4435018
Alignment:
Q  188 tatccttattatctaatcctaaagtacaatgca 220  Q
    ||||||||||||||||||||||| |||||||||    
T  4434986 tatccttattatctaatcctaaactacaatgca 4435018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 17830842 - 17830960
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 288  Q
    ||||||||||||||||| |||  ||||||||||| ||   || |||||||||||||||||  || ||||||||||| |||| | ||||||| |||||||     
T  17830842 atccttattatctaatcataacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtg-atttaaccatatttaatt 17830939  T
Q  289 ccatttttgactttcaaatcc 309  Q
     ||||||||| ||||||||||    
T  17830940 gcatttttgaatttcaaatcc 17830960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 5126 - 5161
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatg 218  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5126 atccttatccttattatctaatcctaatgtacaatg 5161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 37720093 - 37720060
Alignment:
Q  187 ttatccttattatctaatcctaaagtacaatgca 220  Q
    |||||||||||||||||||||||| |||||||||    
T  37720093 ttatccttattatctaatcctaaactacaatgca 37720060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University