View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_22 (Length: 337)
Name: NF13375_low_22
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 55121115 - 55120908
Alignment:
| Q |
12 |
atcatcaataattgactcagaactaatacacatactaattttctttttaatataaatttaagaatatctaatgaacaagatgccttnnnnnnnnnnntct |
111 |
Q |
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| T |
55121115 |
atcatcaataattgactaagaactaatacacatactaattttctttttaatataaatttaacaatatctaacgaacaagatgccttaaaaaaaaa--tct |
55121018 |
T |
|
| Q |
112 |
aatgaacaagaatgatcagattggcaaaggaagcaaaacaattaaatgtactggaacaagaaaagtggatttattaaaatatcatttataattttgcaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55121017 |
aatgaacaagaatgatcagattggcaaaggaagcaaaaaaattaaatgtactgga-caagaaaagtggatttattaaaatatcatttataattttgcaaa |
55120919 |
T |
|
| Q |
212 |
tttcaaggtat |
222 |
Q |
| |
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||||||||||| |
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| T |
55120918 |
tttcaaggtat |
55120908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 55120595 - 55120514
Alignment:
| Q |
242 |
tggtcgtggctcctcccttgccaccccatggttccacagttgaaaggatagatgaactctataattgaatgaatgagttttc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55120595 |
tggtcgtggctcctcccttgccaccccatggttccacagttgaaaggatagatgaactctataattgaatgaatgagttttc |
55120514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 35635110 - 35635165
Alignment:
| Q |
12 |
atcatcaataattgactcagaactaatacacatactaattttctttttaatataaa |
67 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
35635110 |
atcatcgataattgactcagaactaatacatgcactaatttcccttttaatataaa |
35635165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 38395171 - 38395226
Alignment:
| Q |
12 |
atcatcaataattgactcagaactaatacacatactaattttctttttaatataaa |
67 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
38395171 |
atcatcgataattgactcagaactaatacatgcactaatttcccttttaatataaa |
38395226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 27156549 - 27156578
Alignment:
| Q |
12 |
atcatcaataattgactcagaactaataca |
41 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27156549 |
atcatcaataattgactcagaactaataca |
27156578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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