View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_23 (Length: 331)
Name: NF13375_low_23
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38974950 - 38974637
Alignment:
| Q |
1 |
cagatgagtgtattattggagggtccaaagttccacgagacactatattgctttttaatgcttgggccattcgtagagaccctaagagttggagtgaagc |
100 |
Q |
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| T |
38974950 |
cagatgagtgtattattggagggtacaaagttccacgagacactatattgcttgttaatgcttgggccattcatagagaccctaagagttggagtgaagc |
38974851 |
T |
|
| Q |
101 |
cacaagtttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggagaagtgttggct |
200 |
Q |
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| T |
38974850 |
cacaagtttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggagaagtgttggct |
38974751 |
T |
|
| Q |
201 |
atgcgtgcaataagcttgactttgggtttattgattcaatgctttgattggaaaagaatggatgaaaatgagattgatatgagagaagaaagtggtttca |
300 |
Q |
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| T |
38974750 |
atgcgtgcaataagcttgactttgggtttattgattcaatgctttgattggaaaagaatgaatgaaaatgagattgatatgagagaagaaagtggtttca |
38974651 |
T |
|
| Q |
301 |
ccttgtcaagatta |
314 |
Q |
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|||||||||||||| |
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| T |
38974650 |
ccttgtcaagatta |
38974637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 38955748 - 38956001
Alignment:
| Q |
1 |
cagatgagtgtattattggagggtccaaagttccacgagacactatattgctttttaatgcttgggccattcgtagagaccctaagagttggagtgaagc |
100 |
Q |
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| T |
38955748 |
cagatgagtgcattatgggaggatacaaagttccgcgcgacaccatagtattgatcaatgcttgggccattcatagagaccctgaaacatggagtgaagc |
38955847 |
T |
|
| Q |
101 |
cacaagtttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggagaagtgttggct |
200 |
Q |
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| T |
38955848 |
cacaactttcaagccggagaggttcgacaaaaaaggagagttggagaagatgattgcatttggaatgggaagaagggcatgtccaggagaaggtttagct |
38955947 |
T |
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| Q |
201 |
atgcgtgcaataagcttgactttgggtttattgattcaatgctttgattggaaa |
254 |
Q |
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| T |
38955948 |
cttcgagcaattagcatgacattggcattattggttcaatgctttgattggaaa |
38956001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 39584223 - 39584142
Alignment:
| Q |
108 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
189 |
Q |
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| T |
39584223 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
39584142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 12151560 - 12151493
Alignment:
| Q |
117 |
gagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtcc |
184 |
Q |
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| T |
12151560 |
gagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcc |
12151493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 14946477 - 14946551
Alignment:
| Q |
114 |
cctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccagga |
188 |
Q |
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| T |
14946477 |
cctgagaggtttgataaagaaggagaggagaagaagttggttgtttttgggtttggaagaaggtcttgtccagga |
14946551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 14946584 - 14946617
Alignment:
| Q |
221 |
tttgggtttattgattcaatgctttgattggaaa |
254 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
14946584 |
tttgggattattgattcaatgctttgattggaaa |
14946617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 14960427 - 14960455
Alignment:
| Q |
156 |
gcatttgggttaggaagaagggcttgtcc |
184 |
Q |
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| T |
14960427 |
gcatttgggttaggaagaagggcttgtcc |
14960455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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