View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13375_low_24 (Length: 318)

Name: NF13375_low_24
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13375_low_24
NF13375_low_24
[»] chr1 (6 HSPs)
chr1 (10-300)||(28543550-28543844)
chr1 (52-96)||(34911319-34911363)
chr1 (50-85)||(38531421-38531456)
chr1 (50-91)||(15573599-15573640)
chr1 (18-74)||(38132304-38132361)
chr1 (50-86)||(46045965-46046001)
[»] chr7 (8 HSPs)
chr7 (50-91)||(16565218-16565259)
chr7 (50-91)||(16600403-16600444)
chr7 (50-91)||(2297030-2297071)
chr7 (50-91)||(19105119-19105160)
chr7 (50-91)||(24780424-24780465)
chr7 (50-91)||(42880052-42880093)
chr7 (25-85)||(715987-716047)
chr7 (14-85)||(1741946-1742018)
[»] chr5 (3 HSPs)
chr5 (50-91)||(6518968-6519009)
chr5 (50-91)||(43584497-43584538)
chr5 (50-86)||(34446152-34446188)
[»] chr2 (6 HSPs)
chr2 (50-95)||(38809605-38809650)
chr2 (48-91)||(4658353-4658396)
chr2 (59-91)||(9391678-9391710)
chr2 (25-85)||(14285905-14285965)
chr2 (30-74)||(34225745-34225789)
chr2 (47-91)||(37038886-37038930)
[»] chr4 (6 HSPs)
chr4 (50-85)||(52915672-52915707)
chr4 (50-91)||(20448031-20448072)
chr4 (50-79)||(39671215-39671244)
chr4 (50-91)||(51733618-51733659)
chr4 (30-74)||(1868237-1868281)
chr4 (50-86)||(49080605-49080641)
[»] chr3 (6 HSPs)
chr3 (50-85)||(30426447-30426482)
chr3 (50-85)||(48901712-48901747)
chr3 (50-85)||(48903278-48903313)
chr3 (25-91)||(3152923-3152989)
chr3 (50-79)||(49470782-49470811)
chr3 (12-75)||(20512632-20512696)
[»] scaffold0078 (1 HSPs)
scaffold0078 (50-91)||(1533-1574)
[»] chr8 (4 HSPs)
chr8 (50-91)||(6374406-6374447)
chr8 (13-85)||(39698792-39698865)
chr8 (50-91)||(39765979-39766020)
chr8 (50-91)||(40228566-40228607)
[»] chr6 (2 HSPs)
chr6 (13-85)||(24163840-24163913)
chr6 (49-85)||(29399937-29399973)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 28543844 - 28543550
Alignment:
Q  10 ataatactccctccatttacaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagtttttaatgaacatgatatttgttttc 109  Q
    |||||||||||||||||| || |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543844 ataatactccctccattttcattgagtgccatttacgccaaaaaaattgtttcaaaatgaatgtcgttttcagtttttaatgaacatgatatttgttttc 28543745  T
Q  110 ttccaattatacactctaactaagtatatctatatggtcccttaatatatgtgtataaaaccctaaacaaaataggtgggcaggttaaa---tgnnnnnn 206  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  28543744 ttccaattatacactctaattaagtctatctatatggtcccttaatatatgtgtataaaaccctaaacaaaataggtgggcaggttaaacacaaaaaaaa 28543645  T
Q  207 nncaggggtgctgcttgcacaaattgtnnnnnnnactggtagcacc-agatgttggagtgctcgtagcaccaaaagcaggggtgcctgttaaacc 300  Q
      ||||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543644 aacaggggtgctgcttgcacaaattgcggggagcactggtagcaccaagatgttggagtgctcgtagcaccaaaagcaggggtgcctgttaaacc 28543550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 34911319 - 34911363
Alignment:
Q  52 aaaattgtttcaaaatgaatgtcgttttcagtttttaatgaacat 96  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||    
T  34911319 aaaattgtttcaaactgaatgacgttttcagtttttaacgaacat 34911363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 38531456 - 38531421
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||||||||||||||||| ||||||||||    
T  38531456 aaaaaattgtttcaaaatgaatgtcattttcagttt 38531421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 15573599 - 15573640
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  15573599 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 15573640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 38132361 - 38132304
Alignment:
Q  18 ccctccattt-acaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtc 74  Q
    |||||||||| | |||||||||| |||  ||| |||||||||||||||||||||||||    
T  38132361 ccctccatttcaaaatgagtgtcgctttagccaaaaaaattgtttcaaaatgaatgtc 38132304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 46045965 - 46046001
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttt 86  Q
    |||||||||||||||||||||||||  ||||||||||    
T  46045965 aaaaaattgtttcaaaatgaatgtcactttcagtttt 46046001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 16565259 - 16565218
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  16565259 aaaaaattgtttcaaaatgaatgtcattttcagtttctaatg 16565218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 16600403 - 16600444
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  16600403 aaaaaattgtttcaaaatgaatgtcattttcagtttctaatg 16600444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 2297030 - 2297071
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  2297030 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 2297071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 19105160 - 19105119
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||| ||||||||||||  |||||||||||||||    
T  19105160 aaaaaattgttttaaaatgaatgtcactttcagtttttaatg 19105119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 24780465 - 24780424
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  24780465 aaaaaattgtttcaaaatgaatgtcactttcagtttctaatg 24780424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 42880093 - 42880052
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  42880093 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 42880052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 716047 - 715987
Alignment:
Q  25 tttacaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    |||| |||||||||| |||  ||| ||||| |||||||||||||||||||  |||||||||    
T  716047 tttaaaatgagtgtcgctttagccaaaaaatttgtttcaaaatgaatgtcactttcagttt 715987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 1741946 - 1742018
Alignment:
Q  14 tactccctccattt-acaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    |||||||||| ||| | ||||||||||  ||  ||||||||| |||||||||||||||||||  |||||||||    
T  1741946 tactccctccgtttcaaaatgagtgtcgttttagcccaaaaagttgtttcaaaatgaatgtcactttcagttt 1742018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 6518968 - 6519009
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  6518968 aaaaaattgtttcaaaatgaatgtcgctttcagttttcaatg 6519009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 43584538 - 43584497
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  43584538 aaaaaattgttttaaaatgaatgtcgttttcagttttcaatg 43584497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 34446188 - 34446152
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttt 86  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34446188 aaaaaattgtttcaaaatgaatgtcattttcagtttt 34446152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 38809605 - 38809650
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatgaaca 95  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||    
T  38809605 aaaaaattgtttcaaaatgaatgtcgttttcaactttcaatgaaca 38809650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 4658396 - 4658353
Alignment:
Q  48 ccaaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||    
T  4658396 ccaaaaaattgtttcaaaatgaatgtctttttcatttttcaatg 4658353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 9391710 - 9391678
Alignment:
Q  59 tttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||| ||||||||||||||||    
T  9391710 tttcaaaatgaatgtcattttcagtttttaatg 9391678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 14285905 - 14285965
Alignment:
Q  25 tttacaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    |||| ||||||| ||| ||  ||| |||||||| |||||||||||||||| ||||||||||    
T  14285905 tttaaaatgagtatcattttagccaaaaaaattatttcaaaatgaatgtcattttcagttt 14285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 34225745 - 34225789
Alignment:
Q  30 aatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtc 74  Q
    |||||||||| |||  ||| |||||||||||||||||||||||||    
T  34225745 aatgagtgtcgctttagccaaaaaaattgtttcaaaatgaatgtc 34225789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 37038930 - 37038886
Alignment:
Q  47 cccaaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    ||||||||||||||| ||||||||||||  |||||||||| ||||    
T  37038930 cccaaaaaattgttttaaaatgaatgtcactttcagttttcaatg 37038886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 52915707 - 52915672
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    |||||||||||||||||||||||||| |||||||||    
T  52915707 aaaaaattgtttcaaaatgaatgtcgctttcagttt 52915672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 20448031 - 20448072
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  20448031 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 20448072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 39671244 - 39671215
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgtttt 79  Q
    ||||||||||||||||||||||||||||||    
T  39671244 aaaaaattgtttcaaaatgaatgtcgtttt 39671215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 51733659 - 51733618
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  51733659 aaaaaattgtttcaaaatgaatgtcactttcagtttctaatg 51733618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 1868281 - 1868237
Alignment:
Q  30 aatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtc 74  Q
    ||||||||||||||  | | |||||||||||||||||||||||||    
T  1868281 aatgagtgtcactttagtcaaaaaaattgtttcaaaatgaatgtc 1868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 49080641 - 49080605
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttt 86  Q
    |||||||||||||||||||||||||  ||||||||||    
T  49080641 aaaaaattgtttcaaaatgaatgtcactttcagtttt 49080605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 30426482 - 30426447
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||||||||||||||||| ||||||||||    
T  30426482 aaaaaattgtttcaaaatgaatgtcattttcagttt 30426447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 48901712 - 48901747
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||||||||||||||||| ||||||||||    
T  48901712 aaaaaattgtttcaaaatgaatgtcattttcagttt 48901747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 48903278 - 48903313
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||||||||||||||||| ||||||||||    
T  48903278 aaaaaattgtttcaaaatgaatgtcattttcagttt 48903313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 3152989 - 3152923
Alignment:
Q  25 tttacaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||| ||||||||||| ||  ||  |||||||||||||||||||||||||  |||||||||| ||||    
T  3152989 tttaaaatgagtgtcattttagcaaaaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 3152923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 49470782 - 49470811
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgtttt 79  Q
    ||||||||||||||||||||||||||||||    
T  49470782 aaaaaattgtttcaaaatgaatgtcgtttt 49470811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 20512696 - 20512632
Alignment:
Q  12 aatactccctccattt-acaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcg 75  Q
    |||||||||||| ||| | ||||||||||  ||  ||| ||||||||||||||||||||||||||    
T  20512696 aatactccctccgtttcaaaatgagtgtcgttttagccaaaaaaattgtttcaaaatgaatgtcg 20512632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 1574 - 1533
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  ||||||||| |||||    
T  1574 aaaaaattgtttcaaaatgaatgtcactttcagtttctaatg 1533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 6374406 - 6374447
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  6374406 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 6374447  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 39698865 - 39698792
Alignment:
Q  13 atactccctccattt-acaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||| ||| | ||||||||||  ||  ||| |||||||||||||||||||||||||  |||||||||    
T  39698865 atactccctccgtttcaaaatgagtgtcgttttagccaaaaaaattgtttcaaaatgaatgtcactttcagttt 39698792  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 39766020 - 39765979
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  39766020 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 39765979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 40228566 - 40228607
Alignment:
Q  50 aaaaaattgtttcaaaatgaatgtcgttttcagtttttaatg 91  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  40228566 aaaaaattgtttcaaaatgaatgtcactttcagttttcaatg 40228607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 24163913 - 24163840
Alignment:
Q  13 atactccctccattt-acaatgagtgtcacttacgcccaaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||| ||| | ||||||||||| ||  ||| |||||||||||| ||||||||||||  |||||||||    
T  24163913 atactccctccgttttaaaatgagtgtcattttagccaaaaaaattgttttaaaatgaatgtcactttcagttt 24163840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 29399937 - 29399973
Alignment:
Q  49 caaaaaattgtttcaaaatgaatgtcgttttcagttt 85  Q
    ||||||||||||||||||||||||||  |||||||||    
T  29399937 caaaaaattgtttcaaaatgaatgtcactttcagttt 29399973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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