View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13375_low_26 (Length: 312)
Name: NF13375_low_26
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_26 |
 | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
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| [»] scaffold0230 (1 HSPs) |
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|
| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 9550 - 9267
Alignment:
| Q |
18 |
cctagaccaaagtcatctctaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacct |
117 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9550 |
cctagagcaaaatcatctccaatccaaacaactttgattcatttctgttctcacatctgaaaatggctgatgctttacttggaatcttgattcaaaacct |
9451 |
T |
|
| Q |
118 |
cagatcttttgtacaagaggaggttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaa |
217 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9450 |
cggatcatttgtacaagaggagcttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaatccgtgctgtcctaaaa |
9351 |
T |
|
| Q |
218 |
gatgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9350 |
gatgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
9267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 13898 - 13615
Alignment:
| Q |
18 |
cctagaccaaagtcatctctaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacct |
117 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
13898 |
cctagagcaaaatcatctccaatccaaacaactttgattcatttctgttctcacatctgaaaatggctgatgctttacttggaatcttgattcaaaacct |
13799 |
T |
|
| Q |
118 |
cagatcttttgtacaagaggaggttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaa |
217 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
13798 |
cggatcatttgtacaagaggagtttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaatccgtgctgtcctaaaa |
13699 |
T |
|
| Q |
218 |
gatgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
13698 |
gatgcagaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgattgatgctgcttatgtgattgatgat |
13615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 10171 - 9910
Alignment:
| Q |
40 |
tccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
10171 |
tccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggaatcttgattcaaaacctcggatcatttgtacaagaggag |
10072 |
T |
|
| Q |
140 |
gttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10071 |
tttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaatccgtgctgtcctaaaagatgctgaaaagaagcaaataa |
9972 |
T |
|
| Q |
240 |
caaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9971 |
caaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
9910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 16782148 - 16781865
Alignment:
| Q |
18 |
cctagaccaaagtcatctctaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacct |
117 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16782148 |
cctagagcaaagtcatctctaatctaaacaactttgattcatttctgttctcacatctgaaaatggctgatgctttacttggtatcgtgattcaaaacct |
16782049 |
T |
|
| Q |
118 |
cagatcttttgtacaagaggaggttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaa |
217 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16782048 |
cggatcttttgtacaagaggagcttgctacctatttgggtgttggagaattgacccaaagactatctagaaagctcactttaatccgtgctgtcctaaaa |
16781949 |
T |
|
| Q |
218 |
gatgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781948 |
gatgctgaaaagaagcaaataacaaatgatgctgtgaaagagtggttacagcaactgcgtgatgctgcttatgtgcttgatgat |
16781865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 55 - 301
Target Start/End: Complemental strand, 16659019 - 16658772
Alignment:
| Q |
55 |
ttcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgctacctattt |
153 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||| ||| |||| |||||||| |||||||||| | ||||||| |||| ||| ||| |
|
|
| T |
16659019 |
ttcatttctgttctcatacctacaaaatggctgaagctttacttggaatcgtgatagaaaacctcggatcttttgttcgagaggagattgcatccttttt |
16658920 |
T |
|
| Q |
154 |
gggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatgctgtc |
253 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16658919 |
gggtgttggagaattgacccaaaggctatctggaaatctcactgcaattcgtgctgtactaaaagatgctgaaaagaagcaaataacaaacgatcttgtg |
16658820 |
T |
|
| Q |
254 |
aaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
| | ||||| || ||||| |||| ||||||||||| ||||||||| |
|
|
| T |
16658819 |
aggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgat |
16658772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 47 - 301
Target Start/End: Complemental strand, 17070523 - 17070269
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgcta |
146 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||||||| ||||||||||| ||| ||||| |||||||| |||||||||| | ||||||| |||| |
|
|
| T |
17070523 |
aactttgattcatttctgttcacatttctcgaaatggctgaagctttacttggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcat |
17070424 |
T |
|
| Q |
147 |
cctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacga |
246 |
Q |
| |
|
||| |||||||||||||||||||||||| | ||| | ||| ||||| ||| |||||||| ||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
17070423 |
cctttttgggtgttggagaattgacccagaagctaaatgaaaacctcaccacaatccgtgctgtactaaaagatgctgaaaagaagcagataacaagcga |
17070324 |
T |
|
| Q |
247 |
tgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|| ||| ||| | ||||| ||| || || |||||||||||||||| ||||||||| |
|
|
| T |
17070323 |
tgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgat |
17070269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 47 - 301
Target Start/End: Complemental strand, 16798186 - 16797932
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgcta |
146 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| |||||||||| |||||| |||| ||| ||||| |||||||| |||||||||| | ||||||| |||| |
|
|
| T |
16798186 |
aactttgatacatttctgttcacatttctcgaaatggctgacgctttaattggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcat |
16798087 |
T |
|
| Q |
147 |
cctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacga |
246 |
Q |
| |
|
||| |||||||||||||||||||||||| | ||| | ||| ||||| ||| |||||||| ||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
16798086 |
cctttttgggtgttggagaattgacccagaagctaaatgaaaacctcaccacaatccgtgctgtactaaaagatgctgaaaagaagcagataacaagcga |
16797987 |
T |
|
| Q |
247 |
tgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|| ||| || | ||||| ||| || || |||||||||||||||| ||||||||| |
|
|
| T |
16797986 |
tgttgtgcaaaaatggctgcagaaattgggtgatgctgcttatgtacttgatgat |
16797932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 16988490 - 16988211
Alignment:
| Q |
19 |
ctagaccaaagtcatctctaatccaaacaactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacctc |
118 |
Q |
| |
|
||||| ||||||||| || |||||||| |||| |||||||||||||| ||||||| |||||||||| ||||||||||| ||| ||||| |||||||| |
|
|
| T |
16988490 |
ctagagcaaagtcatttccaatccaaaa---tttggttcatttctgttctaatatctgtaaatggctgacgctttacttggaatcgtgattgaaaacctc |
16988394 |
T |
|
| Q |
119 |
agatcttttgtacaagaggaggttgctacctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaag |
218 |
Q |
| |
|
||| |||||| | ||||||| |||| ||| ||||||||||| | |||||||||| | ||| | ||| ||||| ||| |||||||| ||||||| |
|
|
| T |
16988393 |
ggatattttgttcgagaggagcttgcatcctttttgggtgttgaaaaattgacccagaaactaaatgaaaacctcaccacaatccgtgctgtactaaaag |
16988294 |
T |
|
| Q |
219 |
atgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
||||| |||||||||||||||||| | ||| ||| ||| | ||||| ||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
16988293 |
atgctcaaaagaagcaaataacaagcaatgttgtgaaacaatggctgcagaaactgtctgatgctgcttatgtacttgatgat |
16988211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 301
Target Start/End: Original strand, 18872327 - 18872582
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgct |
145 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| | |||||||||||||| |||||||||| | ||||||| || | |
|
|
| T |
18872327 |
aactttgattcatttctgttctcgtacctgcaaaatggctgatgttttacttggaactgtgattcaaaacctcggatcttttgttcgagaggagctttcg |
18872426 |
T |
|
| Q |
146 |
acctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacg |
245 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| |||| | |||| ||||| ||||||||||||||| ||||||||||| |||||||| |||||| | |
|
|
| T |
18872427 |
acctttttgggtgttgaagaattgacacaaaagctatgtggaaatctcaccgcaattcgtgctgtcctccaagatgctgaagagaagcaactaacaagcc |
18872526 |
T |
|
| Q |
246 |
atgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|| ||| ||||| ||||| ||| | ||| ||||| ||| ||||| ||||||||| |
|
|
| T |
18872527 |
gtgttgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgat |
18872582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 47 - 297
Target Start/End: Original strand, 18586845 - 18587096
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgct |
145 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||| |||||| ||||||||| | ||||||||| |||| |||||||||| | ||||||| || | |
|
|
| T |
18586845 |
aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg |
18586944 |
T |
|
| Q |
146 |
acctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacg |
245 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
18586945 |
acctttttgggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtcctccaagatgctgaagagaagcaaataacaagcc |
18587044 |
T |
|
| Q |
246 |
atgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttga |
297 |
Q |
| |
|
|| ||| ||||| ||||| ||| | ||| ||||| ||||||||| ||||| |
|
|
| T |
18587045 |
gtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttga |
18587096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 301
Target Start/End: Original strand, 16867156 - 16867403
Alignment:
| Q |
55 |
ttcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgctacctattt |
153 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||| |||| ||| |||| ||||||| |||||||||| | ||||||| |||| ||| ||| |
|
|
| T |
16867156 |
ttcatttctgttctcatacctacaaaatggctgaagctttgattggaatcgtgatagaaaaccttggatcttttgttcgagaggagattgcatccttttt |
16867255 |
T |
|
| Q |
154 |
gggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatgctgtc |
253 |
Q |
| |
|
||||||||||||||||||||| | ||| | ||| ||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16867256 |
gggtgttggagaattgacccagaaactaaatgaaaacctcaccacaatccgtgatgtactaaaagatgctgaaaagaagcaaataacaaacgatcctgtg |
16867355 |
T |
|
| Q |
254 |
aaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
| | ||||| || ||||| |||| ||||||||||| ||||||||| |
|
|
| T |
16867356 |
aggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgat |
16867403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 301
Target Start/End: Original strand, 18869850 - 18870105
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgct |
145 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||| | |||||||||||||| | || ||||| | ||||||| || | |
|
|
| T |
18869850 |
aactttgattcatttatgttctcttatctggaaaatggctgatgttttacttggaactgtgattcaaaacctcgggtcgtttgttcgagaggagctttcg |
18869949 |
T |
|
| Q |
146 |
acctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacg |
245 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| |||| | |||| ||||| ||||| |||||||| ||||||||||| ||||||||||||| | | |
|
|
| T |
18869950 |
acctttttgggtgttgaagaattgacacaaaagctatgtggaaatctcaccgcaattcaggctgtcctccaagatgctgaagagaagcaaataacgagcc |
18870049 |
T |
|
| Q |
246 |
atgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
|| ||| ||||| ||||| ||| | ||| ||||| ||||||||| ||||||||| |
|
|
| T |
18870050 |
gtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgatgat |
18870105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 18793764 - 18793960
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgct |
145 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||| |||||| ||||||||| | ||||||||| |||| |||||||||| | ||||||| || | |
|
|
| T |
18793764 |
aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg |
18793863 |
T |
|
| Q |
146 |
acctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaa |
242 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
18793864 |
acctttttgggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtccttcaagatgccgaagagaagcaaataacaa |
18793960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 16839499 - 16839372
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgcta |
146 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||||||| |||||| |||| ||| ||||| |||||||| |||||||||| | ||||||| |||| |
|
|
| T |
16839499 |
aactttgattcatttctgttcacatttctcgaaatggctgacgctttaattggaatcgtgattgaaaacctcggatcttttgttcgagaggagattgcat |
16839400 |
T |
|
| Q |
147 |
cctatttgggtgttggagaattgaccca |
174 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
16839399 |
cctttttgggtgttggagaattgaccca |
16839372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 16790357 - 16790239
Alignment:
| Q |
78 |
aaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgctacctatttgggtgttggagaattgacccaaag |
177 |
Q |
| |
|
|||||||||||| ||||||| | | | | |||||||||||| |||||||||| ||||||||| |||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
16790357 |
aaatggctgatgttttacttagaaccgtaattcaaaacctcggatcttttgttcaagaggagcttgcatcctttttgggtgttggggaattgacccaaag |
16790258 |
T |
|
| Q |
178 |
cctatctagaaagctcact |
196 |
Q |
| |
|
||||| |||| |||||| |
|
|
| T |
16790257 |
gctatccggaaatctcact |
16790239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 16838533 - 16838444
Alignment:
| Q |
212 |
ctaaaagatgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | ||| ||| ||| | ||||| ||| || || |||||||||||||||| ||||||||| |
|
|
| T |
16838533 |
ctaaaagatgccgaaaagaagcagataacaagcaatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgat |
16838444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 16788817 - 16788774
Alignment:
| Q |
199 |
aattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaa |
242 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
16788817 |
aattcgtgttgtcctcaaagatgctgaagagaagcaaataacaa |
16788774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 47 - 301
Target Start/End: Complemental strand, 38504 - 38250
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctgaaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgcta |
146 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||||| || |||||||||| ||| ||||| |||| ||| || |||||| | ||| ||| |||| |
|
|
| T |
38504 |
aactttgattcatatctgttctcatttttgaaaatggccgacgctttacttgcaatcgtgattgaaaatctcggacattttgttcgagatgagcttgcat |
38405 |
T |
|
| Q |
147 |
cctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacga |
246 |
Q |
| |
|
||| |||||||||||||||||||||| | | || | |||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38404 |
cctttttgggtgttggagaattgaccgagaagctgcgtggaaaactcagattaatccgtgctgtcctaaaagatgctgaaaaaaagcaaataacaaacga |
38305 |
T |
|
| Q |
247 |
tgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
||| || |||||||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
38304 |
tgccgtgaaagagtggctacagcaactcggtgattctgcttatgtacttgatgat |
38250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 38938504 - 38938754
Alignment:
| Q |
51 |
ttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgctacct |
149 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||||||| |||||||||| ||| ||||| ||| |||| || | ||||| ||||||| |||| |||| |
|
|
| T |
38938504 |
ttgattcatt-ctgttctcatacctgcaaaatggctgacgctttacttgaaatcctgattgaaaccctcggaacatttgttggagaggagcttgcaacct |
38938602 |
T |
|
| Q |
150 |
atttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatgc |
249 |
Q |
| |
|
|||||||||||||||| |||||||| | ||| | |||| |||||| ||||||||||||||| |||||||||||| |||||||||| |||| | ||| |
|
|
| T |
38938603 |
atttgggtgttggagagttgacccagaagctacgtggaaatctcactgcaattcgtgctgtcctcaaagatgctgaagagaagcaaattacaagccatgt |
38938702 |
T |
|
| Q |
250 |
tgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
||| ||||| ||||| ||| || ||||||||| ||||||||| ||||||||| |
|
|
| T |
38938703 |
tgtgaaagactggctgcagaaattgcgtgatgttgcttatgtacttgatgat |
38938754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 301
Target Start/End: Original strand, 7052435 - 7052658
Alignment:
| Q |
78 |
aaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgctacctatttgggtgttggagaattgacccaaag |
177 |
Q |
| |
|
|||||||||||| ||||||||| | | ||||| |||||||| |||||||| | | ||||||| |||| ||| ||||||||| |||||||||||||| | |
|
|
| T |
7052435 |
aaatggctgatgttttacttggaaccgtgattgaaaacctcggatctttttttcgagaggagcttgcatcctttttgggtgtaggagaattgacccagaa |
7052534 |
T |
|
| Q |
178 |
cctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgt |
277 |
Q |
| |
|
|||| | |||| |||||| |||||||||| | || ||||| |||||| ||||||||| |||| | ||||||| ||||| ||||| ||| | ||| | |
|
|
| T |
7052535 |
gctatgtggaaatctcactgcaattcgtgctatactcaaagacgctgaagtgaagcaaattacaagccatgctgtaaaagattggctgcagaagctggct |
7052634 |
T |
|
| Q |
278 |
gatgctgcttatgtgcttgatgat |
301 |
Q |
| |
|
||||||||| |||| ||||||||| |
|
|
| T |
7052635 |
gatgctgctcatgttcttgatgat |
7052658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 264
Target Start/End: Complemental strand, 13379112 - 13378897
Alignment:
| Q |
50 |
tttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgctacc |
148 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||| ||||||||| | ||||||||||||| |||||||||| ||| | ||| || | ||| |
|
|
| T |
13379112 |
tttgattcatttctgttatcatacctgcaaaatggctgatgttttacttggaactgtgattcaaaaccttggatcttttgttcaacaagagctttcaacc |
13379013 |
T |
|
| Q |
149 |
tatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacgatg |
248 |
Q |
| |
|
| |||||||||||||||||||||||| | |||| | |||| |||||| |||||| |||||||| |||||||||||| ||||||||||||||| ||| |
|
|
| T |
13379012 |
tttttgggtgttggagaattgacccagaagctatgtggaaatctcactgcaattcgggctgtcctcaaagatgctgaagagaagcaaataacaagtcatg |
13378913 |
T |
|
| Q |
249 |
ctgtcaaagagtggct |
264 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
13378912 |
ctgtaaaagattggct |
13378897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 47 - 297
Target Start/End: Complemental strand, 5697 - 5446
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgct |
145 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||| |||||| ||||||||| | ||||||||| |||| |||||||||| | ||||||| || | |
|
|
| T |
5697 |
aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg |
5598 |
T |
|
| Q |
146 |
acctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaaacg |
245 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
5597 |
acctttttgggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtcctccaagatgctgaagagaagcaaataacaagcc |
5498 |
T |
|
| Q |
246 |
atgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttga |
297 |
Q |
| |
|
|| ||| ||||| ||||| ||| | ||| ||||| ||||||||| ||||| |
|
|
| T |
5497 |
gtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttga |
5446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 10377 - 10181
Alignment:
| Q |
47 |
aactttgattcatttctgttctcatatctg-aaaatggctgatgctttacttggtatcttgattcaaaacctcagatcttttgtacaagaggaggttgct |
145 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||| |||||| ||||||||| | ||||||||| |||| |||||||||| | ||||||| || | |
|
|
| T |
10377 |
aactttgattcatttctgttcacttacctgcaaaatgactgatgttttacttggaactgtgattcaaatcctcggatcttttgttcgagaggagctttcg |
10278 |
T |
|
| Q |
146 |
acctatttgggtgttggagaattgacccaaagcctatctagaaagctcactttaattcgtgctgtcctaaaagatgctgaaaagaagcaaataacaa |
242 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
10277 |
acctttttgggtgttggagaattgacacaaaagttatgtggaaatctcaccgcaattcgtgctgtccttcaagatgccgaagagaagcaaataacaa |
10181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 20155386 - 20155352
Alignment:
| Q |
218 |
gatgctgaaaagaagcaaataacaaacgatgctgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
20155386 |
gatgctgaaaagaagcaaataacaaatgatgctgt |
20155352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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