View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_27 (Length: 304)
Name: NF13375_low_27
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 7236400 - 7236104
Alignment:
| Q |
10 |
aagaatatggaacgttttcattggtacactcaaaagtctggacaagtcctaagctttttgtataacattgcgtggagtcctatcataataatcatcaaca |
109 |
Q |
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| T |
7236400 |
aagaatatggaacgttttcattggtacactcaaaagtctggacaagtcctaagctttttgtataacattgcgtggagtcctatcataataatcatcaaca |
7236301 |
T |
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| Q |
110 |
tgagtcaaaggaattgttccttgtagttcgactgtacggaaaatatttgctttattttgacatggtaa----------------aatagtatgtataaca |
193 |
Q |
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| T |
7236300 |
tgagtcaaaggaatggttccttgtagttcgactttacggaaaatatttgctctattttgacatggtaaaatatattaaccataaaatagtatgtataaca |
7236201 |
T |
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| Q |
194 |
aagaaaaccgagcttattgaataacaatacactaatatgta----caccaacaacaatagtatctaattacaattttgtaatgatgttctagttttt |
286 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7236200 |
aagaaaaccgagcttattgaataatgatacactaatatgtaatattgcaaacaataatagtatctaattacaattttgtaatgatgttctagttttt |
7236104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 21088953 - 21089066
Alignment:
| Q |
10 |
aagaatatggaacgttttc-attggtacactcaaaagtctggacaagtcctaagctttttgtataacattgcgtggagtcctatcataataatcatcaac |
108 |
Q |
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|||||||||||||| |||| |||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21088953 |
aagaatatggaacgatttccattggtacactcaagaatctggacaagtcccaagctttttgtataacgttgcgtggagtcctatcataataatcatcaac |
21089052 |
T |
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| Q |
109 |
atgagtcaaaggaa |
122 |
Q |
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| T |
21089053 |
aggagtcaaaggaa |
21089066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 18059077 - 18059201
Alignment:
| Q |
10 |
aagaatatggaacgttttc-attggtacactcaaaagtctggacaagtcctaagctttttgtataacattgcgtggagtcctatcataataatcatcaac |
108 |
Q |
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|||||||||||||| |||| || ||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18059077 |
aagaatatggaacgatttccatcggtacactcaagaatctggacaagtcccaagctttttgtataacgttgcgtggagtcctatcataataatcatcaac |
18059176 |
T |
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| Q |
109 |
atgagtcaaaggaattgttccttgt |
133 |
Q |
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| T |
18059177 |
aggagtcaaaggaatggtcccttgt |
18059201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 7384655 - 7384546
Alignment:
| Q |
24 |
ttttcattggtacactcaaaagtctggacaagtcctaagctttttgtataacattgcgtggagtcctatcataataatcatcaacatgagtcaaaggaat |
123 |
Q |
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|||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7384655 |
ttttcattggtacactcatgaatctggacaagtcccaagctttttgtataacgttgcgtggagtcctatcataataatcatcaacaggagtcaaaggaat |
7384556 |
T |
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| Q |
124 |
tgttccttgt |
133 |
Q |
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|| |||||| |
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| T |
7384555 |
ggtcccttgt |
7384546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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