View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_28 (Length: 286)
Name: NF13375_low_28
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 38975220 - 38974935
Alignment:
| Q |
1 |
taattttgatttattaaaaatatatttgcttgtagggtatgcttcttgctggaacagactcatcagctgtaacattagagtgggcattatcttgtgtatt |
100 |
Q |
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| T |
38975220 |
taattttgatttattaaaaatatatttgcttgtagggtatgcttcttgctggaacagactcatcagctgtaacattagagtgggcattatcttgtgtatt |
38975121 |
T |
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| Q |
101 |
gactcatccagaggtactagagacagcaaggtatgaaatagaaagcaatgtaggtcaagaccgtttgttggatgaatctgacctaccaaaactcccttac |
200 |
Q |
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| T |
38975120 |
gactcatccagaggtactagagacggcaaggtatgaaatagaaagcaatgtaggtcaagaccgtttgttggatgaatctgacctaccaaaactcccttac |
38975021 |
T |
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| Q |
201 |
cttaaaaatatcatctatgagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatgagtgtattat |
286 |
Q |
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| T |
38975020 |
cttaaaaatatcatctatgagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatgagtgtattat |
38974935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 38955625 - 38955763
Alignment:
| Q |
148 |
atgtaggtcaagaccgtttgttggatgaatctgacctaccaaaactcccttaccttaaaaatatcatctatgagacacttaggttgtacactcctgctcc |
247 |
Q |
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| T |
38955625 |
atgtaggacaagatcgtttggttgatgaatcagaccttccgaaactaacttacctaagaaatgttatctacgagacccttcgattgtatactcctgctcc |
38955724 |
T |
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| Q |
248 |
attgtcattgccacactcttcttcagatgagtgtattat |
286 |
Q |
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| T |
38955725 |
attgttattaccacactcaactgcagatgagtgcattat |
38955763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 38955516 - 38955560
Alignment:
| Q |
39 |
atgcttcttgctggaacagactcatcagctgtaacattagagtgg |
83 |
Q |
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| T |
38955516 |
atgctccttgctggaacggactcatctgccgtaacattagagtgg |
38955560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 14946272 - 14946370
Alignment:
| Q |
179 |
tgacctaccaaaactcccttaccttaaaaatatcatctatgagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatga |
277 |
Q |
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| T |
14946272 |
tgaccttccaaaacttccttaccttaagaaggtcgtcctagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttcagatga |
14946370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 14960031 - 14960085
Alignment:
| Q |
30 |
ttgtagggtatgcttcttgctggaacagactcatcagctgtaacattagagtggg |
84 |
Q |
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| T |
14960031 |
ttgtagggtatgcttcttgcgggaacagacacatcagcagtgacaatagaatggg |
14960085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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