View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_29 (Length: 284)
Name: NF13375_low_29
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 35755406 - 35755688
Alignment:
| Q |
1 |
accaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35755406 |
accaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattgttttgcatgttcatcaattggaggaagatattgt |
35755505 |
T |
|
| Q |
101 |
tcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggttttctaac---------ttcttctt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
35755506 |
tcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttctaacttcttctttttcttctt |
35755605 |
T |
|
| Q |
192 |
cgtccccccatcctggacctgaaaaggaatgactcaagagaaaagagctactgagaatcacggcctcctcgcctttttcttct |
274 |
Q |
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| T |
35755606 |
cgtccccccatcctggacctgaaaaggaatgactcaagagaaaagagctactgagaatcacggcctcctcgcctttttcttct |
35755688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 35760554 - 35760739
Alignment:
| Q |
3 |
caccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgttc |
102 |
Q |
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||||||| |||||| ||||| |||| | ||| ||||||| || | |||| |||||||||||||||||| ||||||| ||| |||| | |||| ||||| |
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| T |
35760554 |
caccatattgctccgtctgattccatccatgataatcattttggccatttcgccaaccatattcttttgaatgttcaacaacaggagcacgatactgttc |
35760653 |
T |
|
| Q |
103 |
ccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggttttctaacttctt |
188 |
Q |
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| T |
35760654 |
ccaagagtttgtttcattattttcatgttggttcgattcccatccctgagcagcataattcggttcagaaggctttgttacttctt |
35760739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 35785533 - 35785648
Alignment:
| Q |
2 |
ccaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgtt |
101 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||| | |||| |||| |
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| T |
35785533 |
ccaccatagttctccctctgaatccacctctgagaatcattctgactatttttccacccatattcttttgcatgttcatcaacaggagcatgatactgtt |
35785632 |
T |
|
| Q |
102 |
cccaagagtttgtttc |
117 |
Q |
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| T |
35785633 |
cccaagagtttgtttc |
35785648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 35789357 - 35789635
Alignment:
| Q |
1 |
accaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgt |
100 |
Q |
| |
|
||||||||| |||||||||||| |||| | ||||||||||| |||| ||||| ||| ||||||||||||||| | ||||| |||| | ||| ||| |
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| T |
35789357 |
accaccatattgctccctctgattccatccttgagaatcattctgaccatttttccatccatattcttttgcagcatgttcaatgggagcatcatactgt |
35789456 |
T |
|
| Q |
101 |
tcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggttttct-aactt-----cttcttcgt |
194 |
Q |
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| |||| ||||| ||| |||||| ||||||| || |||||||||||| || || ||| |||||| ||| |||| ||| | ||||| ||||||||| |
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| T |
35789457 |
ttccaaaagtttttttggttatttccatgttggttcgattcccatccccgagcaacatcatttggttcataaggctttgttaacttttcgtcttcttcgt |
35789556 |
T |
|
| Q |
195 |
ccccccatcctggacctgaaaaggaatgactcaagagaaaagagctactgagaatcacggcctcctcgcctttttcttc |
273 |
Q |
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|||||||||||||||| || ||||| ||| ||||| | ||| ||||||||||||||| | ||||||||||||||||| |
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| T |
35789557 |
ccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttc |
35789635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 35798985 - 35799158
Alignment:
| Q |
1 |
accaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgt |
100 |
Q |
| |
|
||||||||| ||||||||||| |||| | |||||||||||| |||| ||||||||| |||| |||||||||| | |||| || | | |||| ||| |
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| T |
35798985 |
accaccatatcgctccctctgattccatccctgagaatcattctgaccattttgccatccatgttcttttgcagcatgttcaacgggcgcatgatactgt |
35799084 |
T |
|
| Q |
101 |
tcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaagg |
174 |
Q |
| |
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|| || ||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||| |||||||| |
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| T |
35799085 |
tcacataagtttgtttcattattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaagg |
35799158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 35766033 - 35766211
Alignment:
| Q |
2 |
ccaccatagtgctccctctgaatccacctctgagaatcattgtgactattttgccaaccatattcttttgcatgttcatcaattggaggaagatattgtt |
101 |
Q |
| |
|
|||||| || ||||||||||||||| ||| ||||||| ||| || | ||||| ||| ||||||||||||||| ||| ||||| | || ||| ||| |
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| T |
35766033 |
ccaccaaagcgctccctctgaatccgcctttgagaattattctgcccatttttccatccatattcttttgcacgtttatcaacagaagcccaataacgtt |
35766132 |
T |
|
| Q |
102 |
cccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggttttct |
180 |
Q |
| |
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|||| ||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||| |||||||||||||| |
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| T |
35766133 |
cccaggagtttgtttcatcattttcatgttggttcaattcccatccttgagaagcataatttggttcagaaggttttct |
35766211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 35785641 - 35785763
Alignment:
| Q |
134 |
tttgattcccatccctgaccagcataatttggctcagaaggttttctaac---ttcttcttcgtccccccatcctggacctgaaaaggaatgactcaaga |
230 |
Q |
| |
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|||| ||||||||||||| ||||||| ||||| ||||| || ||| | || |||||||| |||||||||||| ||||| || ||||| ||| |||||| |
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| T |
35785641 |
tttgtttcccatccctgagcagcatagtttggttcagagggctttgttacgttttcttctttgtccccccatccaggaccagacaaggactgattcaaga |
35785740 |
T |
|
| Q |
231 |
gaaaagagctactgagaatcacg |
253 |
Q |
| |
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| | ||| |||| |||||||||| |
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| T |
35785741 |
ggagagaactaccgagaatcacg |
35785763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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