View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_30 (Length: 280)
Name: NF13375_low_30
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_30 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 41764429 - 41764691
Alignment:
| Q |
18 |
cagagatatatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctt |
117 |
Q |
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| T |
41764429 |
cagagatatatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaaaagaccctgagaaggcacatgtatttttcctt |
41764528 |
T |
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| Q |
118 |
tcttatagtgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtccttt |
217 |
Q |
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| T |
41764529 |
tcttatagtgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtccttt |
41764628 |
T |
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| Q |
218 |
ccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatg |
280 |
Q |
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| T |
41764629 |
ccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatg |
41764691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 280
Target Start/End: Original strand, 41756493 - 41756749
Alignment:
| Q |
24 |
tatatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctttcttat |
123 |
Q |
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| T |
41756493 |
tatatactccatggaaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttcctttt |
41756592 |
T |
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| Q |
124 |
agtgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtcctttccgaaa |
223 |
Q |
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| T |
41756593 |
agtgtggcaaagatggtccaatttgtctatgtacgcgattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaa |
41756692 |
T |
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| Q |
224 |
aatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatg |
280 |
Q |
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| T |
41756693 |
aatatcccttttggaaccgaagccttggagctgatcatttcatgctttcttgccatg |
41756749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 26973889 - 26973814
Alignment:
| Q |
205 |
atcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatg |
280 |
Q |
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| T |
26973889 |
atcaatgtcattgctggaaaatatccatattggaatagaagccttggagctgatcatttcatgctagcttgccatg |
26973814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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