View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_32 (Length: 250)
Name: NF13375_low_32
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7955899 - 7956140
Alignment:
| Q |
1 |
tgtggaacaatattaattttttatttgttcaaattcggctctgctatagtgctattgcgctatagacgctatttaacaactgtctaaatttnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7955899 |
tgtggaacaatattaattttttatttgttcaaattcggctctgctatagtgctattgcgctatagacgctatttaacaactgtctaaatttttaaaaaaa |
7955998 |
T |
|
| Q |
101 |
nntctcaggtctgtaacagtttaagctttctttttatgtgggcatggtaggggattcctttgtttgagattttgagtttattttaattgggaacttaggg |
200 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7955999 |
a-tctcatgtctgtaacagtttaagctttctttttacgtgggcatggtaggggattcctttgtttgagattttgagtttattttaattgggaacttaggg |
7956097 |
T |
|
| Q |
201 |
agtatttagaagagcttattttgagcttgttaggttcatctca |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7956098 |
agtatttagaagagcttattttgagcttgttaggtttatctca |
7956140 |
T |
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