View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_36 (Length: 238)
Name: NF13375_low_36
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41015261 - 41015481
Alignment:
| Q |
1 |
cattaaatgtggcttttcatttttcaagactctttgcgccgattctgcctatgaatatgaagagtctctaaattgctaatcaatgtttctaatttttcaa |
100 |
Q |
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| T |
41015261 |
cattaaatgtggcttttcatttttcaagaatctttgcgctgattctgcctatgaatatgaagagtctctgaattggtaatcaatgtttctaatttttcaa |
41015360 |
T |
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| Q |
101 |
tataacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctttctgatttcccatcacttccaatctctcccattctgtcatggcaca |
200 |
Q |
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| T |
41015361 |
tgtaacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctttctgatttcccatcacttccaatctctcccattctgtcatggcaca |
41015460 |
T |
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| Q |
201 |
caataacatccagaccttttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
41015461 |
caataacatccagaccttttt |
41015481 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 34575809 - 34575906
Alignment:
| Q |
51 |
atgaatatgaagagtctctaaattgctaatcaat--gtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtataaatatga |
146 |
Q |
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|||| ||||||||||||||| ||| |||||||| ||||| || ||| |||| |||||||||||| | |||||| |||||||||||||||||||| |
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| T |
34575809 |
atgactatgaagagtctctacgttggtaatcaatatgtttccaactttccaatgtaacagttaccatttccatgcaccatatgattgtataaatatga |
34575906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 17831053 - 17831116
Alignment:
| Q |
51 |
atgaatatgaagagtctctaaattgctaatcaatgtttctaatttttcaatataacagttacca |
114 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| | ||| |||| ||||||||||| |
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| T |
17831053 |
atgactatgaagagtctctacattgctaatcaatgtttcctactttccaatgaaacagttacca |
17831116 |
T |
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