View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13375_low_40 (Length: 217)
Name: NF13375_low_40
Description: NF13375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13375_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 7955625 - 7955841
Alignment:
| Q |
1 |
ctataactaccgttgttgctacaggnnnnnnnnnaatcatttactttgtataattgagagtaaaaattataattataaatatttcacattgtttttcatt |
100 |
Q |
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| T |
7955625 |
ctataactaccgttgttgctacaggtttttttttaatcatttactttgtatgattgagagtaaaaattataattataaatatttcacattgttttttatt |
7955724 |
T |
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| Q |
101 |
tagtttatcgatttcaaatagtatttgtaatggtgaaaacaacgtaaatgctgaaattatcagtgaaatattatagcttgagttgcaggttacactgtca |
200 |
Q |
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| T |
7955725 |
tagtttatcgatttcaaatagtatttgtaatggtgaaaacaacgtaaatgctgaaattatcagtgaaatagtatagcttgagttgcaggttacactgtca |
7955824 |
T |
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| Q |
201 |
agttccgctacacaatc |
217 |
Q |
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|||||| |||||||||| |
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| T |
7955825 |
agttccactacacaatc |
7955841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 35702793 - 35702855
Alignment:
| Q |
67 |
ttataattataaatatttcacattgtttttcatttagtttatcgatttcaaatagtatttgtaa |
130 |
Q |
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| T |
35702793 |
ttataattctaaatatttcacattgtttt-catttagtttatcgatttcaaatagtagttgtaa |
35702855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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